Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1928 ATGGTTGTGCAGGAGAATTTCAGTTCAAGAAGAGATACGATATTTTGCGGGGTATTTGATGGACATGGTCCTTTTGGACATATGGTTGCAAAAAAAGTTCGCGATACCCTCCCTTTAATCTTATGTACACAATGGACATCTAAATCAGACGAAGATCAAAATGGCCTCTTTAAGACGAGACGCTCCAGAAGTTCAAATTCTGAAGATTCTGTTGCTCTAGATGCGGATGAAGACTTTTACAAGTCATTGGAGGCTGAGGAAAATGAAAAATTCCCCAAGATGTTTCTTCCCCTCAAAGTATCTATACTGAAGTCCTTCAAATTAATGGATAAAGAGTTGAAACTGCATCCTAAAATTGATTGTTTTTGCAGTGGATCGACGGCTGTGACTCTAATAAAGCAGGGTCAGAACCTTGTGCTTGGAAATGTTGGTGACTCAAGGGCGGTGCTGGCTACAAGAGACGAAGATAACTCTTTGATTCCGGTTCAATTAACAGTGGACTTGAAACCTGACCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAAGGAAGGGTTTTCGCTTTACAGGATGAGCCCGAAGTTGCACGAGTGTGGTTGCCTAATAACGATTCACCTGGTTTGGCAATGGCGAGAGCTTTCGGAGACTTTTGTCTGAAGGATTTCGGTCTAATCTCCGTTCCTGATGTATACTATCGTCACCTTACCGCGAGAGATCAGTTTGTAATTCTTGCCACTGATGGGGTTTGGGACGTCCTTTCGAACAAGGAAGCTATTGAAATTGTTGCGTCAGCCCCTTCTCGTGAAACAGCAGCCAGAGCTCTTGTCGACTGTGCCGTTCGTGCATGGAGGCTGAAATATCCTACATCCAAGAACGATGATTGTGCTGTTGTATGTCTCTTTCTCGAGTACGAGCCTGAAGCAGAAGAGAACAGGGAAACTTGTGCAAAACCAGTGGAAGAAGTTCTGGCCACGCCAAGCGACAACACTAAGGATATCGAAGTCGATTCCGACCATAGAATGACTGTTCTCGAGCGGTCAGGTACACAACAAAGCTCTAATGAGATTGTACCTGTCTGCGACTCGATCGATGAGAAGGTTGCAGCTGGAGGCCAAAACCCGTCGAAGAGAAGCTTAGCTGAGTGCATTTCAAATGAAGAGGAGGAATGGTCTGCATTGGAAGGTATTACCAGAGTGAATAGTTTGTTAAGCCTTCCAAGGTTCCTATCTGGTGACAAAAGATCAAACAGTTGGAGGAAGTGGCTATGA 1269 44.76 MVVQENFSSRRDTIFCGVFDGHGPFGHMVAKKVRDTLPLILCTQWTSKSDEDQNGLFKTRRSRSSNSEDSVALDADEDFYKSLEAEENEKFPKMFLPLKVSILKSFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQNLVLGNVGDSRAVLATRDEDNSLIPVQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRHLTARDQFVILATDGVWDVLSNKEAIEIVASAPSRETAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEYEPEAEENRETCAKPVEEVLATPSDNTKDIEVDSDHRMTVLERSGTQQSSNEIVPVCDSIDEKVAAGGQNPSKRSLAECISNEEEEWSALEGITRVNSLLSLPRFLSGDKRSNSWRKWL 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20952623 20961454 + Tan0016748.2 Tan01g1928 739352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1928 422 PANTHER PROTEIN PHOSPHATASE 11 301 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g1928 422 SMART PP2C_4 1 300 IPR001932 -
Tan01g1928 422 ProSiteProfiles PPM-type phosphatase domain profile. 1 302 IPR001932 -
Tan01g1928 422 CDD PP2Cc 1 302 IPR001932 -
Tan01g1928 422 SUPERFAMILY PP2C-like 5 303 IPR036457 -
Tan01g1928 422 Gene3D - 2 313 IPR036457 -
Tan01g1928 422 Pfam Protein phosphatase 2C 89 280 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1928 Tan-Chr1:20952623 Tan02g1435 Tan-Chr2:55688458 2.00E-124 dispersed
Tan01g1927 Tan-Chr1:20952623 Tan01g1928 Tan-Chr1:20952623 3.20E-244 tandem
Tan01g1928 Tan-Chr1:20952623 Tan01g1929 Tan-Chr1:20952623 1.50E-244 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1928 - - - 0.0