Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1930 ATGCTGATGGAGCCTTTCAATTCCTCTCATCATAATTATCATCACCATCAAGAAGAAGAAACCAGCTCCTCCTCAGATCTACAATTTCATCAACCCACTACTTCAAATCATTCTCTTCAAATGCGTCAATTACTAATCCGTTCTGCCCATTTCATTTCTCAATCTGATTTCCTCTCTGCCCATCGCCTTCTTTCCATTCTCTCTTCAAACTCTTCCCCTTATGGCGATGCCACTGAGAGATTGCTTCATTATTTCTCCACTTCTCTTTCCCATCGAATCCCTTCTAATTTTTCTTCTTCTTCTTCTTCTGTTCTTCCTCTTCCTTCTTTGACTTCATCAATTGATCGTCATCATGATCATGATGAAGAACAAAAAGGGATTCAATCTTGTTACTTGTCGTTGAATCAAATCACACCCTTCATTCGATTTACTCATTTGACTGCAAATCAGGCCATTTTGGAGGCTATTGAGGAAGGAGGGATTCATGTTGTGGATTTTGATATAATGCATGGTGTTCAATGGCCGCCTCTCATGCAGGCTTTGGCCGACCGTTTTCCTTCTCCTTTGCTTCGGATTACTGCCACTGGTCGTGATCTTAACTTTCTTCATAAAACCGGTGATCGCCTTTCTAAATTTGCTCAGTCTCTTGGGTTGAGGTTTCACTTTCATCCTCTTCTTCTTCTTCATGACCATGACCATCACCGCCTCATTCCCGCCGCTCTCACGCTCTTCCCCGACGAAGCTCTCGCCGTCAACTGCGTCCTCTACTTGCACAGGCTTACAAAGGACGATGTTAGGCTATTGCTTCATAAAATCAAGGCTTTGAATCCGAAAGTGGTGACGATAGCTGAAAAGGAAGCAAATTTCAACCACCCTTTATTCATGCAAAGATTTCTAGAGGCATTGAATCATTACTCTTTAATATTTGAGTCATTGGAAGCAACTTTACCTCCAAATAGTAGGGAGAGGCTGGCAGTGGAGCAAGTTTGGTTTGGAAGGGAAATAGACGACGTCGTTTCAGGAGAAGGGAACAAGAGAAAGCAACGCCATGAGAGGTATGAATCATGGGAGATAATGCTTAAAAGTTTGGGGTTTTCTAATATTCCTTTGAGCCCTTTTGCCCTCTCACAAGCCAAACTTCTCCTAAGGCTCCATTACCCTTCTGAAGGTGTTCTTTCAATGGAGAAAGCTGAAACCGACAAATGA 1206 42.62 MLMEPFNSSHHNYHHHQEEETSSSSDLQFHQPTTSNHSLQMRQLLIRSAHFISQSDFLSAHRLLSILSSNSSPYGDATERLLHYFSTSLSHRIPSNFSSSSSSVLPLPSLTSSIDRHHDHDEEQKGIQSCYLSLNQITPFIRFTHLTANQAILEAIEEGGIHVVDFDIMHGVQWPPLMQALADRFPSPLLRITATGRDLNFLHKTGDRLSKFAQSLGLRFHFHPLLLLHDHDHHRLIPAALTLFPDEALAVNCVLYLHRLTKDDVRLLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFESLEATLPPNSRERLAVEQVWFGREIDDVVSGEGNKRKQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGVLSMEKAETDK 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20994328 20996252 + Tan0017551.1 Tan01g1930 739354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1930 401 Pfam GRAS domain family 41 391 IPR005202 -
Tan01g1930 401 MobiDBLite consensus disorder prediction 1 34 - -
Tan01g1930 401 ProSiteProfiles GRAS family profile. 32 401 IPR005202 -
Tan01g1930 401 MobiDBLite consensus disorder prediction 9 23 - -
Tan01g1930 401 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 386 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1930 Tan-Chr1:20994328 Tan11g0122 Tan-Chr11:1245175 4.90E-56 dispersed
Tan01g1930 Tan-Chr1:20994328 Tan08g2009 Tan-Chr8:72165090 1.10E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26401 PF03514 GRAS 1.30E-104 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1930 K27746 - csv:101213853 559.296