Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g1936 | ATGGCTTTCTGGGACGGAGCTCCATGTCTGGAAGAGGGTTCAATGGGCTTTCCTCTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCTATACCTCCTCTGATGTTCCTCCTTTCATCAGAAAGAGAATGGATAGGTACGGACCGATATTCAGAACAAGTTTGGTGGGAAGACCACTGATTGTCTCAACAGACCCCGACTTGAATTACTTTATCTTTCAACAAGAGGGACAATTGTTCCAGAGCTGGTATCCAGATACCTTCACAGAGATATTTGGAAGACAAAATGTTGGTTCGTTGCACGGTTTCATGTATAAATATCTAAAGAACATGGTTCTTCATCTTTTTGGCCCTGAAAGTCTGAGAAAGATGATACCTGAAGTTGAGGCTGTAGCAACCAGAAGATTGAGACAATGGTCATCGCATGACTCAGTTGAAGTGAAGGATAAGACTGCAAGTATGATTTTTGATCTGACTGCAAAGAAGCTGATTAGTTATGATTCAGAAAATTCTTCGGAGAATTTGAGGGAAAACTTTGTTGCATTCATACAGGGCTTGATCTCCTTCCCTCTAAATGTTCCAGGAACTGCTTATAGCAAATGCTTACAGGGCAGGAAAAAGGCGATGACGATGCTGAAAAACATGTTACAAGAAAGGCGGGCAAATCCAAGGAAACAACAAATAGATTTTTTTGATTTTGTTCTCGAAGAACTGGCGAAAGATGGAACTCTTCTCACTGAAGCAATTGCTTTGGACCTTATGTTTGTACTACTTTTTGCAAGCTTCGAAACTACTTCACTTGCTATCACTGCAGCCATTAAATTTCTCCTCAACAATCCTCATGTGCTGGAGGAGCTGACGGCTGAACATGAGGGAATATTGAAGGCAAGGGAGAATCCAGATTCTGGGCTTACATGGGGAGAATACAAATCCATGACATTCACATTTCAGTTCATCAATGAAACTGTGAGACTGGCAAATATAGTTCCAGGAATCTTTCGAAAATCACTGAGAGATGTACAGTTTAAGGGATATACCATTCCAGCAGGGTGGGCTATTATGGTCTGCCCTCCGGCCGTGCACTTAAATCCAGAAAAGTACGTCGATCCCCTCGCTTTTAATCCGTGGCGGTGGGAGAAATCTGAACTGAATGGAGCCTCTAAACATTTCATGGCTTTTGGTGGAGGCATGAGGTTCTGTGTTGGTACAGATTTTACCAAAGTTCAAATGGCTGTGTTTCTCCATTGCCTGGTTACAAAGTACAGGTTCAAAGCAATCAAGGGAGGCAATATCGTGCGAACTCCCGGTTTACAGTTTCCCGACGGCTTTCACGTTCAAATCATGGAGAAATAG | 1350 | 42.81 | MAFWDGAPCLEEGSMGFPLLGETLQFFAPYTSSDVPPFIRKRMDRYGPIFRTSLVGRPLIVSTDPDLNYFIFQQEGQLFQSWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLHLFGPESLRKMIPEVEAVATRRLRQWSSHDSVEVKDKTASMIFDLTAKKLISYDSENSSENLRENFVAFIQGLISFPLNVPGTAYSKCLQGRKKAMTMLKNMLQERRANPRKQQIDFFDFVLEELAKDGTLLTEAIALDLMFVLLFASFETTSLAITAAIKFLLNNPHVLEELTAEHEGILKARENPDSGLTWGEYKSMTFTFQFINETVRLANIVPGIFRKSLRDVQFKGYTIPAGWAIMVCPPAVHLNPEKYVDPLAFNPWRWEKSELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPDGFHVQIMEK | 449 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 21123931 | 21128857 | + | Tan0004640.3 | Tan01g1936 | 739360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g1936 | 449 | Gene3D | Cytochrome P450 | 7 | 448 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | P450 superfamily signature | 399 | 410 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | P450 superfamily signature | 390 | 399 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | P450 superfamily signature | 259 | 276 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | P450 superfamily signature | 316 | 327 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | CDD | CYP90-like | 42 | 446 | - | - | |
| Tan01g1936 | 449 | PRINTS | E-class P450 group IV signature | 37 | 60 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | E-class P450 group IV signature | 344 | 358 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | E-class P450 group IV signature | 383 | 399 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | E-class P450 group IV signature | 360 | 378 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | E-class P450 group IV signature | 311 | 327 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PRINTS | E-class P450 group IV signature | 399 | 417 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | FunFam | Cytochrome P450 family protein | 7 | 448 | - | - | |
| Tan01g1936 | 449 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 392 | 401 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Tan01g1936 | 449 | Pfam | Cytochrome P450 | 17 | 432 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Tan01g1936 | 449 | PANTHER | CYTOCHROME P450 26 | 11 | 420 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Tan01g1936 | 449 | SUPERFAMILY | Cytochrome P450 | 13 | 445 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g1934 | Tan-Chr1:21123931 | Tan01g1936 | Tan-Chr1:21123931 | 6.20E-257 | dispersed | |
| Tan01g1936 | Tan-Chr1:21123931 | Tan06g1424 | Tan-Chr6:18742710 | 1.90E-117 | dispersed | |
| Tan01g1935 | Tan-Chr1:21123931 | Tan01g1936 | Tan-Chr1:21123931 | 1.00E-248 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g1936 | - | - | - | 0.0 |