Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1939 ATGGCCTTCCGACCCTCTGTTTTTCTCCTCCTCCTTTTCCAGCTTTTCGCCGCCGCAGCCGCCGCCGCCGCCGTCACGGGGTCCTACTCGACGGTGAAGTATCTGCCGGGATTCTCAGGTCCTCTTCCCTTCCAACTCGAAACTGGATATGTAGGAGTGGGGGATGGGGATGAAGCTCAAATATTTCACTATTTTATCAAATCCGACGGAAATCCCCAAACGGACCCTCTCATTCTCTGGCTCACCGGAGGTCCTGGTTGCTCTGCTCTCTCTGGACTTGCCTTTGAAATTGGTCCTCTAAGTTTTAAGGAAGAGCTATACAATGGAAGCCTACCTCAACTAATCTTAGACCCCTACTCATGGACTAAGAAATCTAGTATAATATTTGTAGATTTACCCGTGGGCACTGGATTTTCATATGATAAAACTTCATCAACTCTTAAGGGAGGAGATTTTAGTCAGATTCGTCATTGTCTCCAATTTTTGAGAAAGTGGCTGGTTGATCATCCAAAATTTATAACAAATCCCTTCTACGTTGGTGGAGATTCATACTCTGGTATGATTGTTCCCGTTGTTGCTCAAGAAATTTTAGAAGGAAATAAACGTATTTTTCCATTTATAAATTTTCAGGGATACATATTGGGAAATCCTTATACGATTCGATCTTCAAATGATAATTTTGCAATCCCTTTTGCTCATAGAATGGCTCTCATCTCCGATGAATTGTTTGAGTCATTAAAAACTAGTTGCAAAGGAGACTATGTGAACATTGATCCAAGCAATGTGGAGTGTTTAAGACATTACAAGTCATATAAAGAGTGTATTTCGAAACTCGAGCGAGCGTGTATTTTAGTTCCAAAATGTCTATTTCAATCTCAAAAGCGAACAAATATATCTGGTCGAAGATCTCTCTACAACAATTCAAAGTGGTTGCTTGATCTTAACTCACCACCCTTTGCCATGCATTGCCCTGAGATAAAATACCAACTTTCTTATCATTGGGCTAACAACGACCAAGTTCGAAAAGCACTTCACATACGTGAGGGAAGCATTGGAGAATGGATAAGATGTATGAGTAGAGAGAATTATAATTTTGAAATCCCAAGTGTTTTTCCTTATCATGTGAATCTCAGTTCTAAAGGCTATCGATCTTTGGTCTATAGTGGAGATCATGATATGGTGGTGTCGCATTTAGATACTCAAGCCTGGATTCGAGCTTTAAATTACTCTATTGTTGATGACTGGAGACCATGGTTCATCTTGGATCAAGTAGCCGGGTATACGAGATCCTATGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGACACACAGCTGAATACACACGAAAAGAATGCAGCATAATGTTTAGTAGATGGATATCACGAGAATCCTTATGA 1404 40.53 MAFRPSVFLLLLFQLFAAAAAAAAVTGSYSTVKYLPGFSGPLPFQLETGYVGVGDGDEAQIFHYFIKSDGNPQTDPLILWLTGGPGCSALSGLAFEIGPLSFKEELYNGSLPQLILDPYSWTKKSSIIFVDLPVGTGFSYDKTSSTLKGGDFSQIRHCLQFLRKWLVDHPKFITNPFYVGGDSYSGMIVPVVAQEILEGNKRIFPFINFQGYILGNPYTIRSSNDNFAIPFAHRMALISDELFESLKTSCKGDYVNIDPSNVECLRHYKSYKECISKLERACILVPKCLFQSQKRTNISGRRSLYNNSKWLLDLNSPPFAMHCPEIKYQLSYHWANNDQVRKALHIREGSIGEWIRCMSRENYNFEIPSVFPYHVNLSSKGYRSLVYSGDHDMVVSHLDTQAWIRALNYSIVDDWRPWFILDQVAGYTRSYANKMTFATIKGGGHTAEYTRKECSIMFSRWISRESL 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21148376 21155163 - Tan0000043.1 Tan01g1939 739363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1939 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 461 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Tan01g1939 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan01g1939 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan01g1939 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan01g1939 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan01g1939 467 Gene3D alpha/beta hydrolase 30 467 IPR029058 -
Tan01g1939 467 Pfam Serine carboxypeptidase 36 463 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan01g1939 467 SUPERFAMILY alpha/beta-Hydrolases 31 465 IPR029058 -
Tan01g1939 467 FunFam Serine carboxypeptidase-like 11 26 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1939 Tan-Chr1:21148376 Tan01g4679 Tan-Chr1:112773158 1.60E-191 dispersed
Tan01g1939 Tan-Chr1:21148376 Tan01g1940 Tan-Chr1:21199395 5.80E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1939 K16296 - csv:101207623 613.609