Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1940 ATGCCATCATTTAACATGAGGGAGGAATTCAATTTTACTTCTCATCAAATTAGGCATAGATATCTTGGTCCTCTAAGTTTTAAGGAAGAGCTATACAATGGAAGCTTACCTCAACTAATCTTAGACCCATGGACTAAGGGATACATATTGGGAAATCCTTATACGATTCGTTCTTCAAGTGATAATTTTGCAATCCCTTTTGCTCATAGAATGACTCTCATCTCTGATGAATTGTTTGAGTCATTAAAAACTAGTTGCAAAGGAGACTATGTGAACATTGATCCAAGCAATGTGGAGTGTTTAAGACATTACAAGTCATATGAAGAGGAGATAAAATACCAACTTTCTTATCATTGGGCTAACAACGACCAAGTTCGAAAAGCACTTCACATACGTGAGGTAATAAGGATAAAATGGATAAGATGTATGAGTAAAGACAATTATAATTTTGAAATCCAAAGTGTTTTTCCTTATCATGTGAATCTCAGTTCTAAAAGCTATCGATCTTTGGTCTATAGTGGAGATCATGATATGGTGGTGTCGCATTTAGACACTCAAGCCTGGATTCGAGCTTTAAATTACTCTATTGTTAATGACTGGAGACCATGGTTCATCTTGGATCAAGTAGCCGGGTATACGAGATCCTATGCAAATAAGATGACATTTGCAACTATAAAAGGTGGAGGACACACAGCTGAATACACACGAAAAGAATGCAGCATAATGTTTAGTAGATGGATATCACGAGAATCCTTATGA 759 36.1 MPSFNMREEFNFTSHQIRHRYLGPLSFKEELYNGSLPQLILDPWTKGYILGNPYTIRSSSDNFAIPFAHRMTLISDELFESLKTSCKGDYVNIDPSNVECLRHYKSYEEEIKYQLSYHWANNDQVRKALHIREVIRIKWIRCMSKDNYNFEIQSVFPYHVNLSSKSYRSLVYSGDHDMVVSHLDTQAWIRALNYSIVNDWRPWFILDQVAGYTRSYANKMTFATIKGGGHTAEYTRKECSIMFSRWISRESL 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21199395 21209548 - Tan0021919.1 Tan01g1940 739364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1940 252 Gene3D alpha/beta hydrolase 30 252 IPR029058 -
Tan01g1940 252 Pfam Serine carboxypeptidase 112 248 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Tan01g1940 252 SUPERFAMILY alpha/beta-Hydrolases 46 250 IPR029058 -
Tan01g1940 252 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 246 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Tan01g1940 252 FunFam Carboxypeptidase 108 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1940 Tan-Chr1:21199395 Tan01g4679 Tan-Chr1:112773158 9.80E-79 dispersed
Tan01g1939 Tan-Chr1:21148376 Tan01g1940 Tan-Chr1:21199395 5.80E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1940 K16296 - csv:101207623 293.123