Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1942 ATGGCGTCTTCAAGGTCCCCGAATGGATCGTCCGATGATATCGTCGATTCCACCCCGTTGATGGGGAATCCGAACCGTTCGCTGGATGATGCTCATTCGGGTCGGCGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCCAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTGATCCTTGACATCGTGTGGAATTTTGCTTTTGTTGTTGTTGCTGCTACTGTTTTGGTTCTGAGCCACAACGAGGCTCCTACAATGCCTTTGAGGCTGTGGATTGTGGGCTATGCGTTTCAATGCGGTCTCCATATGGTTTGTGTTTGTGTTGAATATCGTCGGCGCCAACAGCGACGATACTCAGCCTTCAATTCGACGGATGAAGGAAGTTCCTCACGCGGGCTTTCGGGTTTGGGGTCGAGAGGAAACTCTAGTCATTATGTATCATTGGCACAATTGGATGATAACGATACCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTTTCCTTCATCTGGTGGATTATTGGATTTTACTGGGTATCTGCAGGAGGTCAATCTTTAGCACACGTCTCCCCTCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCGCTTTTATATGCTGTTGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGACGATGCCGAGAAATTCTCTGCTGATGTACAGGAACCTCTTGGTGGTATAATGACCGAGTGTGGTACAGACTCACCCATTGAACACGCCCTCTCGCAGGAGGATGCGGAGTGCTGCATCTGCCTGTCTGCGTATGATGATGGCGTCGAGCTACGAGAGCTCCCTTGTGGTCACCATTTCCACTGTGCCTGCGTTGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGTAATCCTGCTCAAGAGGAAGTTTAA 1152 48.09 MASSRSPNGSSDDIVDSTPLMGNPNRSLDDAHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSHNEAPTMPLRLWIVGYAFQCGLHMVCVCVEYRRRQQRRYSAFNSTDEGSSSRGLSGLGSRGNSSHYVSLAQLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSADVQEPLGGIMTECGTDSPIEHALSQEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNPAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21278364 21285075 - Tan0018865.1 Tan01g1942 739366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1942 383 SMART ring_2 328 368 IPR001841 -
Tan01g1942 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 375 IPR013083 -
Tan01g1942 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Tan01g1942 383 PANTHER TARGET OF ERK KINASE MPK-1 42 373 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan01g1942 383 MobiDBLite consensus disorder prediction 1 34 - -
Tan01g1942 383 FunFam E3 ubiquitin-protein ligase At1g12760 314 379 - -
Tan01g1942 383 SUPERFAMILY RING/U-box 319 375 - -
Tan01g1942 383 MobiDBLite consensus disorder prediction 1 24 - -
Tan01g1942 383 Pfam Ring finger domain 327 369 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1942 Tan-Chr1:21278364 Tan10g0280 Tan-Chr10:2419643 4.90E-122 dispersed
Tan01g1942 Tan-Chr1:21278364 Tan01g1943 Tan-Chr1:21278364 1.40E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1942 - - - 0.0