Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1948 ATGGCTGGTCGCATTTTTGAAACCTTGTCATTTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCATCTGCAAATGCATCATTGAAGTTCTTGCTCTTACATGGTTATTTGGACATTTGGGTCAAGGGAGCCAAGAATCTTCCCAATATGGATATGTTTCATAAGACTCTTGGGGATGTGTTTTCAAAAGTGTCTTTTAAGGGTTCCAAAAACAAAAACAGTGATGGGCAAAGGCCTCCAAAAGTGACTAGTGATCCCTATGTGACGATTTCTGTATCAGGTGCTGTGGTAGGAAGAACTTTTGTGATTGATAATGATGAAAATCCTGTTTGGATGCAACATTTTGATGTTCCTGTAGCTCACTATGGTGCTGAAGTGCACTTTGTTGTTAAAGACCATGACGTTGTGGGATCACAAATCATGGGTGTTGTTGCAATTCCTGTGGAACAATTATACTCTGGAGCCTTAGTTGAGGGAACCTACCCAATCCTAAATAGTAGTAGGAAGCCCTGCAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTTCGGCAGACCGGGCGGCCATTTTTCACGGTGGAATGTATGCATCTCCTGATCACCAGGGAGTTTCAGGCACATATTTTCCTGTTAGGAAGGGGGGTAAAGTTACATTGTACCAAGATGCCCATGTTGAGGATGGATGTCTTCCAACAGATTTTAGGCTTCATGGTGGGGTTGAATATGAACACAGGAGCTGTTGGGACGACATCTCTGAATCGATTAGTCATGCTCGTCGTTTGATCTATATTACGGGCTGGTCTGTATACCACAATGTTAGACTGGTTAGAGATGGAAAGGCCAAAGAATGCATATTAGGGGACCTTCTCAAAGCCAAGTCCCAAGAAGGAGTAAGAGTGTTGCTTCTTATATGGGACGATCCAACTTCAACGAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGGTTTTTTAAGAACTCTTCGGTCCAAGTGATTTTGTGCCCACGATCTGGTGGAAAAGGCCATAGTTGGATTAAAAAACAGGAAGCTGGAACAATCTATACCCACCATCAAAAGACAGTTATTGTAGATGCTGATGCTGGCAATTACAGAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTTTGGGTCGATATGATACTTCGAGACATCCTCTTTTCCGGACATTGCAAACTACGCATGTGGATGACTTCCACAACCCTAATTTTACGGGACCACCTACTGGTTGTCCAAGAGAACCATGGCATGATTTGCACTCTAAGATTGATGGCCCAGCGGCATACGACGTCCTTGCGAATTTTGAGGAGCGTTGGTTGAGAGCTTCAGAGCCTCATGGGCTTAAAAAGCTAAAAAAGTTACATGAAGATGTGTTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGATGATGCTGCTCGACTGTGTAACAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGTTCGATCGATTCCAATTCTGTGAAAGGATTTCCTGACAACCCAAAAGATGCTATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGATATGAGTATACATTCAGCATATGTCAGTGCAATTCGAGCTGCCCAACGGTTTATTTATATCGAAAACCAATACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTGGGGGCTAATAACTTAATACCGATGGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTAGTTATCCCAATGTGGCCAGAAGGTGTTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTACGAAATGATATATACGGCTTTAGAGGAGGTGGGACTTCATAAAACATATGAGCCTCAAGACTACTTGAATTTCTTCTGCCTCGGAAACCGTGAGGTGCTCGATGTTAGGGACGGTGTTGAAGCTGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTATGTCCTATTGGGATCAGCAAATATCAATCAGCGGTCCCTTGAAGGTACCAGAGATACTGAAATAGCAATGGGTGCATATCAACCTCGTCATACATGGTCGTCAAGCAAACGCTTAAGCCCACACGGTCAGGTCTATGGATATAGAATGTCATTATGGGCAGAGCACACAGGGACTATGGAGGAATGTTTCGAGAGACCAGAGAGTATCGAATGCGTAAGACGAATCAGATCATTGGGTGAGAGGAATTGGAAACAGTATGTAGCTGAGGAAGTGACTGAAATGAGAAGTCATCTTCTTAAATATCCATTGCAAGTTGATCCAACTGGTAAGGTGACTCATCTTCCTGGTTCTGAAACCTTCCCAGATCTTGGTGGCAACATATTGGGAACATTCATTGCCATCCAAGAGAACCTTACAATTTGA 2559 42.05 MAGRIFETLSFGSQHGQGNQSLPFSSANASLKFLLLHGYLDIWVKGAKNLPNMDMFHKTLGDVFSKVSFKGSKNKNSDGQRPPKVTSDPYVTISVSGAVVGRTFVIDNDENPVWMQHFDVPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEQLYSGALVEGTYPILNSSRKPCKPGAVLSLSIQYTSADRAAIFHGGMYASPDHQGVSGTYFPVRKGGKVTLYQDAHVEDGCLPTDFRLHGGVEYEHRSCWDDISESISHARRLIYITGWSVYHNVRLVRDGKAKECILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVILCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGNYRRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPPTGCPREPWHDLHSKIDGPAAYDVLANFEERWLRASEPHGLKKLKKLHEDVLLKIERIPEILGIDDAARLCNNDPEGWNVQIFRSIDSNSVKGFPDNPKDAISRNLVCGKNVMIDMSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSTPIQRILFWQSRTMQMMYEMIYTALEEVGLHKTYEPQDYLNFFCLGNREVLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQPRHTWSSSKRLSPHGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWKQYVAEEVTEMRSHLLKYPLQVDPTGKVTHLPGSETFPDLGGNILGTFIAIQENLTI 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21422153 21429390 - Tan0016773.1 Tan01g1948 739372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1948 852 Gene3D Endonuclease Chain A 241 480 - -
Tan01g1948 852 Pfam Phospholipase D Active site motif 699 724 IPR001736 GO:0003824(InterPro)
Tan01g1948 852 Pfam Phospholipase D Active site motif 367 397 IPR001736 GO:0003824(InterPro)
Tan01g1948 852 SMART pld_4 365 400 IPR001736 GO:0003824(InterPro)
Tan01g1948 852 SMART pld_4 697 724 IPR001736 GO:0003824(InterPro)
Tan01g1948 852 ProSiteProfiles C2 domain profile. 14 164 IPR000008 -
Tan01g1948 852 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 187 IPR035892 -
Tan01g1948 852 Pfam Phospholipase D C terminal 772 842 IPR024632 -
Tan01g1948 852 FunFam Phospholipase D delta 242 479 - -
Tan01g1948 852 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 697 724 IPR001736 GO:0003824(InterPro)
Tan01g1948 852 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 365 400 IPR001736 GO:0003824(InterPro)
Tan01g1948 852 SMART C2_3c 39 163 IPR000008 -
Tan01g1948 852 Pfam C2 domain 38 165 IPR000008 -
Tan01g1948 852 SUPERFAMILY Phospholipase D/nuclease 546 784 - -
Tan01g1948 852 CDD C2_plant_PLD 34 187 - -
Tan01g1948 852 PIRSF PLD_plant 25 852 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Tan01g1948 852 Gene3D Endonuclease Chain A 511 754 - -
Tan01g1948 852 Gene3D C2 domain 24 187 IPR035892 -
Tan01g1948 852 PANTHER PHOSPHOLIPASE D 35 840 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Tan01g1948 852 FunFam Phospholipase D 513 743 - -
Tan01g1948 852 SUPERFAMILY Phospholipase D/nuclease 209 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1948 Tan-Chr1:21422153 Tan06g2132 Tan-Chr6:70585955 0.00E+00 dispersed
Tan01g1948 Tan-Chr1:21422153 Tan06g0405 Tan-Chr6:3041041 6.10E-197 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1948 K01115 - csv:101208016 1644.02