Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1950 ATGGCTTCCTACTTCCCTCATCGGAGCTTTGTCCTCGTTTTCTTTTTGCCTCTTATTATGCTAGGGATGACTACTAAATCGGTGCTCGCGATCTTTCGACCGAGCCCTTGGAAGCTTGCCCATGCCACATTTTATGGCGATGAGACAGCATCTGAAACAATGGGAGGAGCTTGTGGATATGGAAACTTGTTCACGAACGGCTACGGCGTCGACACGGTGGCTCTAAGCTCTACACTCTTCAACAATGGTTACGCTTGTGGAACTTGCTTTCAAATCAAATGCATCCAATCCAAAGCTTGTTATGCTCAAGTTGCTTTCACGACGGTGACGGCGACCAATCTTTGCCCGCCGAATTGGGCCAAACCGTCCGACAACGGCGGGTGGTGCAACCCTCCGAGGGTTCACTTCGACATGTCGAAACCTGCTTTTATGAAGATCGCTAATTGGAAGGCCGGGATCGTCCCCGTCGTGTACCGGCGAGTCGCCTGCGGCCAAAAGGGCGGCCTTCGGTTTACATTCCAAGGAAATGGGTACTGGCTTTTGGCGTACGTGATGAACGTCGGCGGCGGAGGGGATGTGTCGGGGATGTGGGTTAAAGGAAGCAAAACAGGGTGGATCAAAATGAGCCATAATTGGGGAGCTTCCTATCAAGCATTTTCAACTTTGGTTGGACAATCTTTGTCTTTTAGAGTCACCTCCTACACCACCAAAGAGACCATCACGGCTTGGAATGTTGCTCCTTCTAATTGGAGGTTCGGGTTGACCTACAAAGCCAATGTTAACTTTCGTTGA 792 50.25 MASYFPHRSFVLVFFLPLIMLGMTTKSVLAIFRPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVDTVALSSTLFNNGYACGTCFQIKCIQSKACYAQVAFTTVTATNLCPPNWAKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIVPVVYRRVACGQKGGLRFTFQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRVTSYTTKETITAWNVAPSNWRFGLTYKANVNFR 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21473742 21475261 - Tan0015071.1 Tan01g1950 739374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1950 263 Pfam Lytic transglycolase 72 158 IPR009009 -
Tan01g1950 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Tan01g1950 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
Tan01g1950 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
Tan01g1950 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Tan01g1950 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Tan01g1950 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Tan01g1950 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Tan01g1950 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Tan01g1950 263 SMART dpbb_1 72 158 IPR007112 -
Tan01g1950 263 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Tan01g1950 263 Gene3D - 23 163 IPR036908 -
Tan01g1950 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 PRINTS Expansin signature 107 117 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Tan01g1950 263 PANTHER EXPANSIN-A15 25 258 IPR002963 GO:0009664(InterPro)
Tan01g1950 263 Gene3D - 164 263 IPR036749 -
Tan01g1950 263 CDD DPBB_EXPA_N 36 163 - -
Tan01g1950 263 SUPERFAMILY PHL pollen allergen 166 257 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1950 Tan-Chr1:21473742 Tan03g0945 Tan-Chr3:65909605 7.90E-79 dispersed
Tan01g1950 Tan-Chr1:21473742 Tan07g1730 Tan-Chr7:68667309 2.90E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1950 - - - 0.0