Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1965 ATGAGAAGGGTTCATCGGCTATCTCTTTCTTCTCATGCTCTTCTGTTCTTGATTCCATTTCTCATCGGAATTTGCTCCGCTGTCACTGAGAAGGACATTTTGCTTCAATTCAAAGATGCTGTCACAGAGGATCCGTTTGATTTCTTGAGAACGTGGGTCGCCGGCGAGGATCATTGCCGGAATTTCAGCGGCGTGTTGTGTAATTCCGATGGTTTTGTGGAGAAGATTGTTCTATGGAACTCCAGCTTGGCTGGAACTTTGTCGCCTGCCTTGTCGGGATTGAAGTTTTTGAGGACTTTGACATTGTATGGGAATAGATTTACTGGCAATATTCCAATTGAATATGGCGACATTGTTTCATTGTGGAAGCTGAATTTGAGCTCCAATGCTTTGTCTGGTTCGGTCCCGGAGTTCATCGGCGATTTGCCGAACATTCGGTTTTTGGATTTATCTAGAAATAGCTTTACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTCAAAACTAGATTTGTTTCATTTTCTCACAACAAATTTTCAGGTATGATACCTTCAACAATTTTGAACTGTTTGAGCCTTGAAGGCTTTGATTTCTCAAACAATGATCTAAGTGGGAGCATTCCTTTGCAACTTTGTAACATTCAAAGATTAGAGTATGTTTCTGTGAGAAGCAATGCACTTTTTGGAAGTGTCCAAGGGCAGTTCTCTGCTTGCCAGAGATTGAAACTTGTGGATCTGAGTAGCAATTTGTTCACCGGGTCGCCACCGTTCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTTGTGGGCTGTAGTAATAATCTGGAAGTTCTTGATGTTTCATGGAATGGTTTGGATGGGGAGATCCCATTGAGCATTACAAAGTGTGGGAGTCTTAAAATCCTGGATTTGGAATCTAACAAGCTGGTTGGGAAGATTCCTGCTGGACTTGCAGATTTGAAAAAGCTTTTGGTGATTCGGTTGGGTTATAATTCAATCACCGGGATGGTTCCAGCCATTTTCGGGAACATTGAGCTACTTCAGGTTTTGAATTTGCACAGTCTCAAACTTGTTGGTGAGATTCCTGATGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGTAATGCATTGGAAGGGGGAATTCCTCAATCTCTTTATAACATGACATACCTTGAAATTCTTGATCTTCATGATAACCATCTGAACGGAAGCATTCCGTCGACACTTGGGAACCTCTCGAAACTACAGTTTCTGGATCTATCTCGAAACCTACTATCTGGTTCGATACCACCTGCTCTTGAAAATCTCACATTGCTGCACCATTTTAATGTCTCTTTCAATAACCTTTCGGGCACTATACCTCCTGTGAAGACGATCCAAGATTTTGGGCCTTCTGCATTCTCAAACAATCCTTTTCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCAGATAACACCACTGGCACGATTTCCACATCGAAGAAGCCAAAGGTTCTTAGTCTATCTGCAATCATTGCAATTGTAGCAGCGGTTGTGATCCTGGTTGGGGTTTGCGTGATATCCATTTTGAACCTAATGGCTCGAACAAGGAAGGCAAGGAGCACCGAAATCATTGAGAGCACACCACTCGGTTCAACTGATTCAGGCGTCATAATTGGGAAGCTGGTTCTTTTCAGCAAAACTTTGCCATCAAAGTATGAAGACTGGGAGGCTGGCACCAAAGCATTGCTTGACAAGGAATGTCTAATAGGGGGTGGCTCGATCGGCACCGTCTACAAGACAAGTTTCGAGGGTGGAATCTCCATTGCTGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGCCAAGACGAGTTCGAGACAGAAATTGGACGTTTGGGAAACATTAAACACCCGAACTTAGTTGCTTTTCAGGGGTACTATTGGTCCTCATCAATGCAGTTGATTCTATCTGAATTCGTAGCAAACGGAAATTTGTACGACAATCTACACGGTCTGAGTTATCCAGGCACGAGCACAGGCATTGGCAATACAGAGTTACATTGGTTTAGGAGATATCAAATTGCGCTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTGGACCTCCAATTCTTCATCTCAACATAAAGTCAACTAACATACTGTTAGACGAAAACTACGAAGCCAAGTTATCAGATTACGGGTTGGGGAAGTTGCTTCCCGTTTTGGACAATTACATCTTAACCAAGTACCATACTGCTGTAGGCTATGTCGCACCAGAGTTGGCGCAAAGCTTGAGAGTTAGTGAAAAATGCGACGTCTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGGAGCCAGTTGAGAGTCCAAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTCGATCGAAACTTACGTGGCATTGCCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCTGAGATCTCTTCGAAGAGACCGAGCATGGCTGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAACGGATTAGGATCATAG 2652 43.25 MRRVHRLSLSSHALLFLIPFLIGICSAVTEKDILLQFKDAVTEDPFDFLRTWVAGEDHCRNFSGVLCNSDGFVEKIVLWNSSLAGTLSPALSGLKFLRTLTLYGNRFTGNIPIEYGDIVSLWKLNLSSNALSGSVPEFIGDLPNIRFLDLSRNSFTGEIPSAVFKNCFKTRFVSFSHNKFSGMIPSTILNCLSLEGFDFSNNDLSGSIPLQLCNIQRLEYVSVRSNALFGSVQGQFSACQRLKLVDLSSNLFTGSPPFEVLGFKNITYFNVSYNRFSGGIAEVVGCSNNLEVLDVSWNGLDGEIPLSITKCGSLKILDLESNKLVGKIPAGLADLKKLLVIRLGYNSITGMVPAIFGNIELLQVLNLHSLKLVGEIPDDITSCRFLLELDISGNALEGGIPQSLYNMTYLEILDLHDNHLNGSIPSTLGNLSKLQFLDLSRNLLSGSIPPALENLTLLHHFNVSFNNLSGTIPPVKTIQDFGPSAFSNNPFLCGAPLDPCSADNTTGTISTSKKPKVLSLSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVANGNLYDNLHGLSYPGTSTGIGNTELHWFRRYQIALGTARALAYLHHDCGPPILHLNIKSTNILLDENYEAKLSDYGLGKLLPVLDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGREPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEISSKRPSMAEVVQVLESIRNGLGS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21772237 21776083 - Tan0000007.1 Tan01g1965 739389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1965 883 Pfam Leucine rich repeat 313 369 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Gene3D Ribonuclease Inhibitor 238 508 IPR032675 -
Tan01g1965 883 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 280 504 - -
Tan01g1965 883 Gene3D Phosphorylase Kinase; domain 1 572 672 - -
Tan01g1965 883 SUPERFAMILY L domain-like 261 499 - -
Tan01g1965 883 Pfam Protein kinase domain 600 872 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1965 883 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Tan01g1965 883 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 ProSiteProfiles Protein kinase domain profile. 596 877 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g1965 883 FunFam Leucine-rich repeat receptor protein kinase EMS1 184 279 - -
Tan01g1965 883 Gene3D Ribonuclease Inhibitor 168 237 IPR032675 -
Tan01g1965 883 Gene3D Transferase(Phosphotransferase) domain 1 673 881 - -
Tan01g1965 883 SUPERFAMILY L domain-like 29 280 - -
Tan01g1965 883 Gene3D Ribonuclease Inhibitor 27 167 IPR032675 -
Tan01g1965 883 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 27 169 - -
Tan01g1965 883 FunFam Putative LRR receptor-like serine/threonine-protein kinase 674 881 - -
Tan01g1965 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 442 878 IPR050647 -
Tan01g1965 883 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Pfam Leucine Rich Repeat 410 431 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Pfam Leucine Rich Repeat 433 455 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 Pfam Leucine Rich Repeat 144 163 IPR001611 GO:0005515(InterPro)
Tan01g1965 883 CDD STKc_IRAK 602 877 - -
Tan01g1965 883 FunFam Putative LRR receptor-like serine/threonine-protein kinase 573 672 - -
Tan01g1965 883 SMART LRR_typ_2 142 166 IPR003591 -
Tan01g1965 883 SMART LRR_typ_2 431 455 IPR003591 -
Tan01g1965 883 SMART LRR_typ_2 335 358 IPR003591 -
Tan01g1965 883 SMART LRR_typ_2 407 430 IPR003591 -
Tan01g1965 883 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1965 Tan-Chr1:21772237 Tan10g1269 Tan-Chr10:14433395 1.10E-81 dispersed
Tan01g1965 Tan-Chr1:21772237 Tan11g0336 Tan-Chr11:2634873 8.20E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67051 PF00069 Pkinase 1.10E-34 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1965 - - - 0.0