Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1972 ATGGAGGGACGAGAAAGGGATACCGGAAATGGTGTTGCGGCGGCCGTACGATTAGATCCTTCGAGGACCAACACGGCGGCTCCGACATCGGAAGGTGGAGGTCCGGTGATTTCTCCGGCGGCAACAGGGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGTGGCGCTGTCGCCGAAGCCGATATCAGCGTCGGCACCGGCACCGGCGGCGGTGATTGATTTCTCGGCGGAGAAACGTGGGAAAGTGCGGCCGGCGAGTTCTTTGAGCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTTACACCCCATATCATCACTGTCAACACTGGTGAGGACATTACGATGAAGGTTCTCTCCTTTTCTCAACAAGGGCCTCGAGCCATCTGCATTCTCTCCGCTAACGGCGTGATTTCGAGTGTCACGCTTCGTCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGGTCGATTCGAGATATTGTCGTTGTCGGGATCGTTCATGCCGAGCGACAGTGCAGGAACGAGGAGTAGAACCGGTGGAATGAGTGTCTCCTTAGCGAGTCCAGATGGACGCGTCGTTGGTGGCGGAGTTGCTGGTTTGTTAGTAGCTGCAAGTCCTGTTCAAGTGGTAGTAGGAAGCTTTATATCTGGGAACCAGCATGAACAAAAGCCGAAGAAGCCGAAACAGGACGTCGTATTACCAGTTTCTGCTCTTCCAATCTCCAACACTCAACCGAAGTCATACATGACGACGACGACAACAACAACGACATCATCGTTTCAAGCTGAAACTTGGTCACCTTTGGTACCAGATTTGAGAAGTCAGTCAACTGATATTAATGTATCTTTAACCAGTGGTTAA 918 51.2 MEGRERDTGNGVAAAVRLDPSRTNTAAPTSEGGGPVISPAATGKKKRGRPRKYGPDGKLNVVALSPKPISASAPAPAAVIDFSAEKRGKVRPASSLSKTKYEVENLGEWVPCSVGANFTPHIITVNTGEDITMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDSAGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFISGNQHEQKPKKPKQDVVLPVSALPISNTQPKSYMTTTTTTTTSSFQAETWSPLVPDLRSQSTDINVSLTSG 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21889389 21892620 + Tan0004996.1 Tan01g1972 739396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1972 305 CDD DUF296 119 210 IPR005175 -
Tan01g1972 305 FunFam AT-hook motif nuclear-localized protein 1-like 120 250 - -
Tan01g1972 305 MobiDBLite consensus disorder prediction 1 58 - -
Tan01g1972 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 21 269 IPR039605 GO:0003680(InterPro)
Tan01g1972 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 238 - -
Tan01g1972 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 120 233 IPR005175 -
Tan01g1972 305 Gene3D - 120 250 - -
Tan01g1972 305 ProSiteProfiles PPC domain profile profile. 115 260 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1972 Tan-Chr1:21889389 Tan07g1762 Tan-Chr7:69191597 9.00E-111 dispersed
Tan01g1972 Tan-Chr1:21889389 Tan07g1754 Tan-Chr7:69092337 5.60E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1972 - - - 0.0