Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g1989 ATGAGAGCCTTCTGTAGATTTTGGAATTTATCGTACAAATTCCGAAACGATACTGAATTAATTAGATGTTTTCATTCCGGAACCAAACTGGAATTCAGTTCTCCGGATTCTTCCTTCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCCTTACCGCCTTACGAAGCTGCTGTTAAGCTTAAAGCTGCAGCAGCTTCCTTCGGCGTTGTTCGACACATGGCGGCGTATGCGAATCGGCATGCGTTTAGCTATGTGCCGCAGGTTGTTAGGGAGCAGAGGAGAGAGAGGAAGATGTTGAATCAATTGGAGAGTAAGGGTGTGATTAAATCGATTGAGCCGTATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTGGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTAAATCAGATCGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGCTCGCTAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGATTCCAAAAGTGGGATATGGTTTAGCAGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAAGCTGTGTCGGATAAGCCAGAAGCTGCTGATGTAGAATTGAGAAACGACATGGTGGAGATTATGGATAGGAGAAGAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCAGATTTTGTGAATGTTTTGAAGGAGGCCAAATTGAGATGTCTCAGGACAGTTGTTGTAGGGGATGTTAATGATGGACCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGAAGGAGATTTTAATGGGGAAGGCTAAAAAGGAGGCTGTGTCTGTTGTGGGGAAATGGAAGGATAGAGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCAATTGGAGAAGAAAGTCTTTGATTCGGATGATTTAGGCGAAGATGAAGATGTTGAAGGTTCTGTTAATGGGGGACGTTGTGAGAATATACAAAATGATGACAGTGGTGCTTGGTGGGATCTCAGCTCTGATACTGAAACTGAAATTGTTTCATCAGGATTATGTAAATAA 1101 41.14 MRAFCRFWNLSYKFRNDTELIRCFHSGTKLEFSSPDSSFSTVAIFWDLDNKPPKSLPPYEAAVKLKAAAASFGVVRHMAAYANRHAFSYVPQVVREQRRERKMLNQLESKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLLAKYSMKIQKYKNAARDVLIPKVGYGLADELKRAGFFVKAVSDKPEAADVELRNDMVEIMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDVNDGPLKRNADTGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPQLEKKVFDSDDLGEDEDVEGSVNGGRCENIQNDDSGAWWDLSSDTETEIVSSGLCK 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22162652 22164142 + Tan0002312.1 Tan01g1989 739413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g1989 366 Gene3D - 36 279 - -
Tan01g1989 366 Pfam NYN domain 192 271 IPR021139 GO:0004540(InterPro)
Tan01g1989 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Tan01g1989 366 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Tan01g1989 366 CDD PIN_LabA-like 129 260 - -
Tan01g1989 366 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Tan01g1989 366 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 37 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1989 Tan-Chr1:22162652 Tan01g4749 Tan-Chr1:113311000 3.70E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26402 PF01936 NYN 9.40E-10 CL0280 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g1989 - - - 0.0