Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2003 ATGTCATCTTCTTCTCTTCCCACCACCTTCTCCCAACTTCCTCCTCCTTCCGACCAGCTATGCTATGTTCATTGCAACATTTGCGACACGGTTTTGGCGGTGAGTGTTCCTTCGGCTAGTTTGTTCAAAACCGTCACCGTCCGTTGCGGCCACTGCGCCAACTTTCTACCGGTGAACATGCGCGGTGGCGCCGTCCTTCTCCCTTCTGCAAATCAATTCCATGCCACTGCTTTCTTCTCTCCCATTCCTCACAATTTTCTGGAAGAGATCTCGAATCCAAATCCAAATCCAAATTTTCTGATCAACCAAACAAATGGAATTGATTTGAGTATGGCAACTCGTGTAGCCAACGATGTTCCAAGGCAACCCCCAAGCATAAATAGACCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGCATTAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTCTTCTTCCTGACCACACAGCCAAAAAGACAAACATGCTTGAGCAGGAAGGAGAAGAAGTTATGTTGAAAGATGATCGGTTTTTCGGTTCAACGAACATGGGAGTTTCCCCATATTAA 657 47.03 MSSSSLPTTFSQLPPPSDQLCYVHCNICDTVLAVSVPSASLFKTVTVRCGHCANFLPVNMRGGAVLLPSANQFHATAFFSPIPHNFLEEISNPNPNPNFLINQTNGIDLSMATRVANDVPRQPPSINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGLLPDHTAKKTNMLEQEGEEVMLKDDRFFGSTNMGVSPY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22336772 22343402 + Tan0014764.1 Tan01g2003 739427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2003 218 FunFam Axial regulator YABBY 126 198 - -
Tan01g2003 218 Gene3D High mobility group box domain 126 197 IPR036910 -
Tan01g2003 218 PANTHER PROTEIN YABBY 6-RELATED 16 190 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Tan01g2003 218 SUPERFAMILY HMG-box 121 174 IPR036910 -
Tan01g2003 218 Pfam YABBY protein 16 181 IPR006780 GO:0007275(InterPro)
Tan01g2003 218 CDD HMG-box_SF 135 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2003 K25796 - - vvi:100267708 309.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2003 Tan-Chr1:22336772 Tan07g1851 Tan-Chr7:70058851 2.30E-76 dispersed
Tan01g2003 Tan-Chr1:22336772 Tan08g0251 Tan-Chr8:2246320 3.50E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0975 . 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 53.3 4.7e-46 181.8
Tan07g1851 . 79 237 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 9.8e-43 170.6
Tan01g2003 . 66 218 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 4.5e-40 161.8
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT1G08465 69.0 1.7e-56 216.5
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT1G08465 68.0 4.7e-46 181.8
Tan07g1851 . 35 227 C2C2-YABBY Transcription Factor Family AT1G08465 53.1 4.4e-44 175.3
Tan09g1419 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 56.2 1.1e-42 170.6
Tan01g2003 . 17 195 C2C2-YABBY Transcription Factor Family AT1G08465 51.6 4.6e-41 165.2
Tan07g1851 . 46 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.6 1.6e-50 196.8
Tan01g2003 . 27 216 C2C2-YABBY Transcription Factor Family AT4G00180 52.1 6.3e-47 184.9
Tan04g1253 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.0 8.5e-41 164.9
Tan09g1419 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 5.9e-64 241.1
Tan08g0251 . 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.1 1.4e-62 236.5
Tan05g0067 . 1 168 C2C2-YABBY Transcription Factor Family AT2G26580 62.5 3.3e-51 198.7
Tan07g1851 . 35 199 C2C2-YABBY Transcription Factor Family AT2G26580 54.1 1.5e-43 173.3
Tan05g0068 . 8 151 C2C2-YABBY Transcription Factor Family AT2G26580 63.2 6.3e-42 167.9
Tan01g2003 . 17 182 C2C2-YABBY Transcription Factor Family AT2G26580 51.2 6.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26405 PF04690 YABBY 2.10E-69 CL0114 Tan TF