Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2003 ATGTCATCTTCTTCTCTTCCCACCACCTTCTCCCAACTTCCTCCTCCTTCCGACCAGCTATGCTATGTTCATTGCAACATTTGCGACACGGTTTTGGCGGTGAGTGTTCCTTCGGCTAGTTTGTTCAAAACCGTCACCGTCCGTTGCGGCCACTGCGCCAACTTTCTACCGGTGAACATGCGCGGTGGCGCCGTCCTTCTCCCTTCTGCAAATCAATTCCATGCCACTGCTTTCTTCTCTCCCATTCCTCACAATTTTCTGGAAGAGATCTCGAATCCAAATCCAAATCCAAATTTTCTGATCAACCAAACAAATGGAATTGATTTGAGTATGGCAACTCGTGTAGCCAACGATGTTCCAAGGCAACCCCCAAGCATAAATAGACCTCCAGAAAAGAGACAGAGAGTACCCTCTGCTTACAACCGATTCATCAAGGACGAGATCCAACGCATTAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCACTTCCCTCACATTCATTTTGGTCTTCTTCCTGACCACACAGCCAAAAAGACAAACATGCTTGAGCAGGAAGGAGAAGAAGTTATGTTGAAAGATGATCGGTTTTTCGGTTCAACGAACATGGGAGTTTCCCCATATTAA 657 47.03 MSSSSLPTTFSQLPPPSDQLCYVHCNICDTVLAVSVPSASLFKTVTVRCGHCANFLPVNMRGGAVLLPSANQFHATAFFSPIPHNFLEEISNPNPNPNFLINQTNGIDLSMATRVANDVPRQPPSINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIHFGLLPDHTAKKTNMLEQEGEEVMLKDDRFFGSTNMGVSPY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22336772 22343402 + Tan0014764.1 Tan01g2003 739427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2003 218 FunFam Axial regulator YABBY 126 198 - -
Tan01g2003 218 Gene3D High mobility group box domain 126 197 IPR036910 -
Tan01g2003 218 PANTHER PROTEIN YABBY 6-RELATED 16 190 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Tan01g2003 218 SUPERFAMILY HMG-box 121 174 IPR036910 -
Tan01g2003 218 Pfam YABBY protein 16 181 IPR006780 GO:0007275(InterPro)
Tan01g2003 218 CDD HMG-box_SF 135 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2003 Tan-Chr1:22336772 Tan07g1851 Tan-Chr7:70058851 2.30E-76 dispersed
Tan01g2003 Tan-Chr1:22336772 Tan08g0251 Tan-Chr8:2246320 3.50E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26405 PF04690 YABBY 2.10E-69 CL0114 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2003 K25796 - vvi:100267708 309.686