Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2010 ATGTCGGCCATTAAAGATGAAGATCCTCGCATCCATGGAATCCGAACCAACATCCGCGTCGTTCCTGATTTTCCGAAACCAGGTATCATGTTCCAGGACATTACCACTCTGTTGCTTCAACCGAAGGCCTTCAAGGATGCGATTGACATGTTCGTCGAGCGATACAAGGGGAAAAACATCACCGTCGTTGCAGGAATTGAAGCGCGTGGGTTTATTTTTGGTCCTCCAATTGCGTTGGCTATCGGAGCAAAGTTTGTGCCCCTGAGAAAACCAAAGAAATTGCCTGGTGAAGTTATGTTCGAAGAGTACATCTTGGAATATGGAAGGGATCGCCTTGAAATGCATGTTGGCGCTGTCGAGGCCGGCGAACGTGCCTTGGTTGTTGATGACTTGATTGCCACTGGCGGCACTCTCTGTGCAGCCATCAATTTACTTGAACGGGCTGGAGCAGAAGTGGTTGACTGTGCATGCGTGATTGAGTTACCAGATTTAAAGGGTCGAGAGAGATTAAACGGGAAACCACTGTACATTTTAGTGGAGTACCGATGA 549 48.09 MSAIKDEDPRIHGIRTNIRVVPDFPKPGIMFQDITTLLLQPKAFKDAIDMFVERYKGKNITVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEVMFEEYILEYGRDRLEMHVGAVEAGERALVVDDLIATGGTLCAAINLLERAGAEVVDCACVIELPDLKGRERLNGKPLYILVEYR 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22426905 22437499 - Tan0000668.1 Tan01g2010 739434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2010 182 CDD PRTases_typeI 47 180 IPR000836 -
Tan01g2010 182 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Tan01g2010 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5 180 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Tan01g2010 182 Gene3D - 2 181 IPR029057 -
Tan01g2010 182 Pfam Phosphoribosyl transferase domain 37 163 IPR000836 -
Tan01g2010 182 NCBIfam adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Tan01g2010 182 SUPERFAMILY PRTase-like 13 174 IPR029057 -
Tan01g2010 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2010 K00759 - - mdm:103409565 333.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2010 Tan-Chr1:22426905 Tan07g1842 Tan-Chr7:69958177 7.80E-86 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan05g1228 . 65 551 PRT Gene Family AT2G16570 84.0 5.9e-241 830.9
Tan05g1228 . 71 551 PRT Gene Family AT4G34740 84.9 1.1e-239 826.6
Tan05g1228 . 71 524 PRT Gene Family AT4G38880 75.2 5.0e-197 684.9
Tan02g1742 . 1 182 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan02g1743 . 74 255 PRT Gene Family AT1G27450 83.0 3.4e-81 298.5
Tan07g1842 . 7 180 PRT Gene Family AT1G27450 74.7 1.3e-72 270.0
Tan01g2010 . 7 180 PRT Gene Family AT1G27450 73.0 9.4e-71 263.8
Tan07g1841 . 7 172 PRT Gene Family AT1G27450 74.7 4.7e-70 261.5
Tan02g2731 . 11 183 PRT Gene Family AT1G27450 68.8 5.3e-66 248.1
Tan02g2731 . 33 188 PRT Gene Family AT1G80050 79.5 1.0e-65 246.9
Tan07g1842 . 30 180 PRT Gene Family AT1G80050 74.8 1.6e-61 233.0
Tan01g2010 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-60 229.9
Tan07g1841 . 30 170 PRT Gene Family AT1G80050 75.2 1.8e-57 219.5
Tan02g1742 . 30 179 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan02g1743 . 103 252 PRT Gene Family AT1G80050 69.3 1.8e-54 209.5
Tan07g1841 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan07g1842 . 5 97 PRT Gene Family AT4G22570 84.9 2.8e-43 171.8
Tan01g2010 . 5 97 PRT Gene Family AT4G22570 84.9 8.2e-43 170.2
Tan02g1742 . 5 97 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g1743 . 78 170 PRT Gene Family AT4G22570 80.6 2.5e-39 158.7
Tan02g2731 . 11 100 PRT Gene Family AT4G22570 78.9 3.0e-37 151.8
Tan07g1841 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan07g1842 . 1 96 PRT Gene Family AT4G12440 83.3 1.6e-40 162.5
Tan01g2010 . 1 96 PRT Gene Family AT4G12440 82.3 1.3e-39 159.5
Tan02g1742 . 1 96 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g1743 . 74 169 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 4 99 PRT Gene Family AT4G12440 78.1 4.7e-37 151.0
Tan02g2731 . 1 148 PRT Gene Family AT5G11160 81.1 6.0e-64 241.1
Tan07g1841 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan07g1842 . 8 145 PRT Gene Family AT5G11160 76.1 7.8e-56 214.2
Tan02g1742 . 8 145 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan02g1743 . 81 218 PRT Gene Family AT5G11160 71.7 1.6e-53 206.5
Tan01g2010 . 8 145 PRT Gene Family AT5G11160 71.7 4.0e-52 201.8
Tan11g1087 . 1 186 PRT Gene Family AT1G71750 67.0 2.1e-71 266.2
Tan01g3234 . 16 469 PRT Gene Family AT1G55810 85.5 1.9e-226 782.3
Tan07g0116 . 19 482 PRT Gene Family AT1G55810 74.6 4.3e-202 701.4
Tan04g1998 . 19 482 PRT Gene Family AT1G55810 73.1 2.6e-199 692.2
Tan01g3234 . 66 468 PRT Gene Family AT3G27440 77.4 5.8e-185 644.4
Tan07g0116 . 80 482 PRT Gene Family AT3G27440 75.4 1.5e-180 629.8
Tan04g1998 . 80 482 PRT Gene Family AT3G27440 74.7 9.0e-178 620.5
Tan07g0116 . 1 482 PRT Gene Family AT3G27190 87.0 1.7e-249 859.0
Tan04g1998 . 1 482 PRT Gene Family AT3G27190 84.9 2.9e-244 841.6
Tan01g3234 . 3 468 PRT Gene Family AT3G27190 74.6 1.3e-209 726.5
Tan03g0911 . 3 289 PRT Gene Family AT3G53900 68.3 1.3e-109 393.7
Tan03g0913 . 3 276 PRT Gene Family AT3G53900 66.4 8.3e-101 364.4
Tan03g0912 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan03g0914 . 3 238 PRT Gene Family AT3G53900 64.9 3.9e-82 302.4
Tan01g3234 . 1 469 PRT Gene Family AT4G26510 84.3 1.5e-234 809.3
Tan07g0116 . 7 482 PRT Gene Family AT4G26510 76.1 1.5e-213 739.6
Tan04g1998 . 11 482 PRT Gene Family AT4G26510 74.4 2.5e-208 722.2
Tan07g0116 . 1 482 PRT Gene Family AT5G40870 87.2 7.9e-250 860.1
Tan04g1998 . 1 482 PRT Gene Family AT5G40870 85.1 9.3e-243 836.6
Tan01g3234 . 3 471 PRT Gene Family AT5G40870 73.7 2.0e-208 722.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139