Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2012 ATGCAGGGACAGCTGAAAGTACTTTTGGAAGAAAGATCTTGTTTGATTGATACCTTGAGGGAATTGGAGGCAGCTAATATAGAAATTGAAGCTAATGGAATTCACAATGGTGAGTACCAGTTGATGAAGCATGATTTTTCCACCGAATGCAGTGGAAAATACAGTGAATGTACTACTACCGAATCTTCAGATGACGTTGAAAAACAAGATCTTGAAGATGGATCAGATGTTGATGAAAGTTTCTTTTATGACACAAAGGAATCTTTTACAGAACTCACTCTTAGCCGTGGATCAGTAAAAGGGGCTTCTGATTCGTCCGATAAGTTTAAGGATCTTGAAAGTGGACAGGACGATGCAGAGAAGATGCACGACAAACAGAGAATTGAAAATTTTGTTCATTCTAATGTTCAGAGAAGAAAAAACCTTCCAGATCCCATGGAGAAAGAGAAACGAATCAGTCTTTGGTCTATGATAAAAGACAATGTGGGAAAGGATCTTACAAGAGTTTGTCTCCCAGTTTATTTCAATGAGCCCATATCATCCCTTCAGAAATGTTGTGAGGATCTGGAATATTCTCATCTTTTAGATCAAGCATATGAACATGGAATACAGGGAAACAATTTCCTCAGAGTCCTCAAGGTTGCCGCATTTGCTGTTTCTGGTTATGCTTCCTCTGAAGGACGACATTGTAAACCATTTAACCCTTTGCTTGGGGAAACTTATGAAGCTGATTTTCCTGAGAAAGGGATTCGCTTCTTCTCCGAGAAGGTCTGTCACCACCCGACCGTCATTGCATGCCACTGTGAAGGTAGAGGATGGAAATTCTGGGGTGACAGTAATCTCCGATCAAAATTTTGGGGCCGTTCGATTCAGCTTGACCCTGTTGGAGTTTTGAACCTGGAATTCGATGATGGAGAAATATTTCAGTGGAGCAAGGTGACAACAAATATTTATAATCTCATTCTTGGAAAAGTGTATTGTGATCACCACGGTACGATGCACATACGTGGTAATAGAGAATATTCTTGCACACTTAAGTTCAAAGAGCCTTCAATTCTGGATCGAAATCCTCATCAGGTTCATGGATTTATTGAAGATGCTAGTGGTCGAAAGATGGCCACAATATTTGGGAAGTGGGATGAAGGAATGTATTATGTTGAAGGTGAGAGCAATGGAAACCTGAAGCGAAATAGTCCTTCAATTGATGGCTCAATGCTGTGGAAAAGCGAAAAAGCTCCTCCTAATCTCACTCGTTATAATTTAACTTCATTTGCCATCACTCTTAATGAACTGACAGTGGACCTGAAGGAAAGGCTTCCACCCACGGATTCAAGACTTAGACCAGACCAGCGGCATTTGGAAAATGGCGAATACGAAAAGGCTAATGCAGAGAAACAGCGCTTGGAGAGACGACAACGAATTTCCAGGAAGTTGCAAGACAATGGTTGGAAACCCAGATGGTTCCATAGAGAGGGTGAAAACGGGCCATACCGATACACGGGTGGCTACTGGGAAGCACGAGAGGAAGGAAACTGGGATGGTTGCCCAGATGTATTTGGCGAATTGAACGAGAGCATGGTCGGTGAATCGGGATCGTGA 1599 42.09 MQGQLKVLLEERSCLIDTLRELEAANIEIEANGIHNGEYQLMKHDFSTECSGKYSECTTTESSDDVEKQDLEDGSDVDESFFYDTKESFTELTLSRGSVKGASDSSDKFKDLESGQDDAEKMHDKQRIENFVHSNVQRRKNLPDPMEKEKRISLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSHLLDQAYEHGIQGNNFLRVLKVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVCHHPTVIACHCEGRGWKFWGDSNLRSKFWGRSIQLDPVGVLNLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNREYSCTLKFKEPSILDRNPHQVHGFIEDASGRKMATIFGKWDEGMYYVEGESNGNLKRNSPSIDGSMLWKSEKAPPNLTRYNLTSFAITLNELTVDLKERLPPTDSRLRPDQRHLENGEYEKANAEKQRLERRQRISRKLQDNGWKPRWFHREGENGPYRYTGGYWEAREEGNWDGCPDVFGELNESMVGESGS 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22569295 22577989 + Tan0004004.2 Tan01g2012 739436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2012 532 MobiDBLite consensus disorder prediction 96 119 - -
Tan01g2012 532 FunFam Oxysterol-binding protein-related protein 2A 450 521 - -
Tan01g2012 532 Gene3D - 239 412 - -
Tan01g2012 532 MobiDBLite consensus disorder prediction 52 74 - -
Tan01g2012 532 SUPERFAMILY Oxysterol-binding protein-like 148 525 IPR037239 -
Tan01g2012 532 Coils Coil 451 478 - -
Tan01g2012 532 FunFam oxysterol-binding protein-related protein 1D isoform X1 239 411 - -
Tan01g2012 532 Gene3D - 450 511 - -
Tan01g2012 532 Pfam Oxysterol-binding protein 153 508 IPR000648 GO:0008289(InterPro)
Tan01g2012 532 Coils Coil 5 25 - -
Tan01g2012 532 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 67 495 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Tan01g2012 532 MobiDBLite consensus disorder prediction 103 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2012 K20456 - - csv:101213703 1008.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2012 Tan-Chr1:22569295 Tan07g1839 Tan-Chr7:69904758 4.00E-231 dispersed
Tan01g2011 Tan-Chr1:22566927 Tan01g2012 Tan-Chr1:22569295 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88