Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2062 | ATGGAAGATCCTCTTCAAAGATTCCAATTTCACTCTGAATCCTCTTCTTCATCTTCTTCATCATCATCTTCATCAGATATCAAAAATTGCATCAAAGAAAAGAACTCCAAAAAGGTTAAACTCGTAAACGACGGCAAACATCCCACATATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCTGAAATCAGAGAACCCAAAAAGAAATCAAGAATTTGGTTAGGTACATTTTCAACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGCCATTCCGCTTACCTCAACTTCCCCGAATTGGCTCACCGTTTCCCCCTTCCGGCCAGCTCTTCTCCCAAGGACATTCGAGCCGCCGCCGCCAAAGCCGCCTCGTTTACCAATAATCTCCTCGATCCCACCGACGCCGCTCATTCCGACCTCAATCGCTCTCCTTCCTCCGCCGCCGCCCCGAAATCGCCCGGTGATATCGATGATCCTTTCTTCGATCTTCCCGATCTCTTCCTTCATCCGAATCACCAAATCGATACATTCTGCTTCTCTCAAATTCTCCCGATCGACGGCTTCGACTCTGTTTTCAGCCGCCCGCCGTCGCCGTCGCCGTCCGAATATTTCGCCTACAGAGGTAGCCTACTCTAG | 660 | 50.3 | MEDPLQRFQFHSESSSSSSSSSSSSDIKNCIKEKNSKKVKLVNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPLPASSSPKDIRAAAAKAASFTNNLLDPTDAAHSDLNRSPSSAAAPKSPGDIDDPFFDLPDLFLHPNHQIDTFCFSQILPIDGFDSVFSRPPSPSPSEYFAYRGSLL | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23587414 | 23588331 | - | Tan0006736.1 | Tan01g2062 | 739486 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2062 | 219 | MobiDBLite | consensus disorder prediction | 142 | 162 | - | - | |
Tan01g2062 | 219 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2062 | 219 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Tan01g2062 | 219 | CDD | AP2 | 50 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2062 | 219 | Pfam | AP2 domain | 49 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2062 | 219 | FunFam | Ethylene-responsive transcription factor 2 | 48 | 107 | - | - | |
Tan01g2062 | 219 | MobiDBLite | consensus disorder prediction | 142 | 156 | - | - | |
Tan01g2062 | 219 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2062 | 219 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2062 | 219 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2062 | 219 | SUPERFAMILY | DNA-binding domain | 49 | 107 | IPR016177 | GO:0003677(InterPro) | |
Tan01g2062 | 219 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 19 | 177 | IPR051032 | - | |
Tan01g2062 | 219 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
Tan01g2062 | 219 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2062 | Tan-Chr1:23587414 | Tan08g0138 | Tan-Chr8:1200833 | 5.20E-36 | dispersed | |
Tan01g2062 | Tan-Chr1:23587414 | Tan09g1224 | Tan-Chr9:64693612 | 7.30E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26408 | PF00847 | AP2 | 4.80E-13 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2062 | - | - | - | 0.0 |