Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2062 ATGGAAGATCCTCTTCAAAGATTCCAATTTCACTCTGAATCCTCTTCTTCATCTTCTTCATCATCATCTTCATCAGATATCAAAAATTGCATCAAAGAAAAGAACTCCAAAAAGGTTAAACTCGTAAACGACGGCAAACATCCCACATATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCTGAAATCAGAGAACCCAAAAAGAAATCAAGAATTTGGTTAGGTACATTTTCAACGCCGGAAATGGCTGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGCCATTCCGCTTACCTCAACTTCCCCGAATTGGCTCACCGTTTCCCCCTTCCGGCCAGCTCTTCTCCCAAGGACATTCGAGCCGCCGCCGCCAAAGCCGCCTCGTTTACCAATAATCTCCTCGATCCCACCGACGCCGCTCATTCCGACCTCAATCGCTCTCCTTCCTCCGCCGCCGCCCCGAAATCGCCCGGTGATATCGATGATCCTTTCTTCGATCTTCCCGATCTCTTCCTTCATCCGAATCACCAAATCGATACATTCTGCTTCTCTCAAATTCTCCCGATCGACGGCTTCGACTCTGTTTTCAGCCGCCCGCCGTCGCCGTCGCCGTCCGAATATTTCGCCTACAGAGGTAGCCTACTCTAG 660 50.3 MEDPLQRFQFHSESSSSSSSSSSSSDIKNCIKEKNSKKVKLVNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPLPASSSPKDIRAAAAKAASFTNNLLDPTDAAHSDLNRSPSSAAAPKSPGDIDDPFFDLPDLFLHPNHQIDTFCFSQILPIDGFDSVFSRPPSPSPSEYFAYRGSLL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23587414 23588331 - Tan0006736.1 Tan01g2062 739486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2062 219 MobiDBLite consensus disorder prediction 142 162 - -
Tan01g2062 219 SMART rav1_2 49 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2062 219 MobiDBLite consensus disorder prediction 1 29 - -
Tan01g2062 219 CDD AP2 50 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2062 219 Pfam AP2 domain 49 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2062 219 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Tan01g2062 219 MobiDBLite consensus disorder prediction 142 156 - -
Tan01g2062 219 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2062 219 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2062 219 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2062 219 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677(InterPro)
Tan01g2062 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 177 IPR051032 -
Tan01g2062 219 MobiDBLite consensus disorder prediction 8 29 - -
Tan01g2062 219 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2062 Tan-Chr1:23587414 Tan08g0138 Tan-Chr8:1200833 5.20E-36 dispersed
Tan01g2062 Tan-Chr1:23587414 Tan09g1224 Tan-Chr9:64693612 7.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26408 PF00847 AP2 4.80E-13 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2062 - - - 0.0