Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2068 ATGATGGCTGGTAAAGATGATAACCTTGGATTGAGCCTTGGATTGAGCTTTGATTCTTCTCATCATCATCATCATTTGCCGCTCAATCTCATGCCTTCTTGGAATAATGACGCCTCCTCAGATCGGACATCGGAAACCGGGCGATCGTTGCTTCGAGGCATCGATGTGAACCGGATGCCGCCGTCAGTGGCGGATTGCGAGGAGGAGGCGGCGATGTCGAGTCCTAACAGTACGGTTTCGAGCGTCAGTGGGAAGAGGAGTGAACGGGAGGGGAACGGCGAGGATCTTGACGGCGACAGATCTTGTTCTAGAGGAATAAGCGACGAAGAAGACGGTGAAACTTCCAGAAAAAAGCTTCGTCTTACGAAAGATCAGTCCGCCGTTCTGGAAGAGAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCGTTGGCTAAACAGTTGGGTCTCCGTCCGAGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAGAATCTGACGGAGGAAAACAGGCGGTTGCAAAAAGAAGTTCAAGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCATCATGTGAGCGCGTCGCGGTCCCACCCTCCACGTCACCCACGCCTACCGTAACCCGAATGGCCCAAGCCCACCACGCTCGCCCCATCCACATCAACCCGTGGGCCTCCGCCATCCCGGCCCGTCCCTTCAACGCCCTCCACCCTCGCTCGTAA 828 53.14 MMAGKDDNLGLSLGLSFDSSHHHHHLPLNLMPSWNNDASSDRTSETGRSLLRGIDVNRMPPSVADCEEEAAMSSPNSTVSSVSGKRSEREGNGEDLDGDRSCSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSTSPTPTVTRMAQAHHARPIHINPWASAIPARPFNALHPRS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23654003 23655752 + Tan0019124.1 Tan01g2068 739492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2068 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 2 245 IPR050762 -
Tan01g2068 275 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan01g2068 275 MobiDBLite consensus disorder prediction 37 119 - -
Tan01g2068 275 Pfam Homeobox associated leucine zipper 172 206 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2068 275 SMART HOX_1 114 176 IPR001356 GO:0003677(InterPro)
Tan01g2068 275 SUPERFAMILY Homeodomain-like 102 173 IPR009057 -
Tan01g2068 275 Pfam HD-ZIP protein N terminus 2 90 IPR006712 GO:0005634(InterPro)
Tan01g2068 275 MobiDBLite consensus disorder prediction 87 119 - -
Tan01g2068 275 Gene3D - 122 168 - -
Tan01g2068 275 MobiDBLite consensus disorder prediction 71 86 - -
Tan01g2068 275 SMART halz 172 215 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2068 275 Pfam Homeodomain 116 170 IPR001356 GO:0003677(InterPro)
Tan01g2068 275 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677(InterPro)
Tan01g2068 275 Coils Coil 171 208 - -
Tan01g2068 275 CDD homeodomain 116 173 IPR001356 GO:0003677(InterPro)
Tan01g2068 275 FunFam Homeobox-leucine zipper protein 18 103 177 - -
Tan01g2068 275 PRINTS Lambda-repressor HTH signature 143 152 IPR000047 GO:0003677(InterPro)
Tan01g2068 275 PRINTS Lambda-repressor HTH signature 152 168 IPR000047 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2068 Tan-Chr1:23654003 Tan10g0059 Tan-Chr10:933680 8.80E-73 dispersed
Tan01g2068 Tan-Chr1:23654003 Tan03g1718 Tan-Chr3:73128639 1.30E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26410 PF04618 HD-ZIP_N 2.60E-22 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2068 K09338 - csv:101223208 431.024