Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2079 ATGATGTATGGACAGAGTAATGGCTGTGAATCGGATTTTGTTCTTCTGGAATCCATTCGGCGGCATTTGTTGGGAGATTCCGATGCTCTCCGATTTGGGAATTTCGGAACCGCCGCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGTTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCTGAGGATATGGTCCTCGCCGGAGTCCTCCGCGATGCCGTCCGGGTCGGTTGGGTTCCGTCGCTTGGATCGTCGTCGCCAGAGACCTTCAATTTTGATTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTTATGGAGACGAAGGTGGTGGCGGCGCCGTTGCCGGCAGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTTCGACAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATCCGTGACCCGGCAAAAAACGGGGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGGATGCGGCGTTGGCTTACGACCGCGCCGCTTATCGGATGCGCGGCTCTAAAGCTCTTCTCAATTTCCCACTTCGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAGCGGTCGTCACCCCGATCATCGCCGGAGCCTACTTCTTCGTCGTCATCGGTGGAAAGTGGGTCCCCGAAGCGGCGGAAGAAGGCGGACGGCACGGCGATTGCTGTGGCCGCGCCGGAGTTGATACAATTGGTGGTGGGGACCAATGCAATGCAAGTGGAAGCTGACGTGGCAAAGTGTACAAGTGGCGAGCAATGA 840 57.86 MMYGQSNGCESDFVLLESIRRHLLGDSDALRFGNFGTAAPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVLAGVLRDAVRVGWVPSLGSSSPETFNFDFSDVKPEPEILPPVNILPEVMETKVVAAPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSSSSVESGSPKRRKKADGTAIAVAAPELIQLVVGTNAMQVEADVAKCTSGEQ 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23845653 23846947 + Tan0000943.1 Tan01g2079 739503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2079 279 FunFam Ethylene-responsive transcription factor 2 140 200 - -
Tan01g2079 279 Gene3D AP2/ERF domain 140 202 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2079 279 PRINTS Ethylene responsive element binding protein signature 165 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2079 279 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2079 279 MobiDBLite consensus disorder prediction 205 245 - -
Tan01g2079 279 PANTHER DNA-BINDING DOMAIN 123 231 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan01g2079 279 Pfam AP2 domain 141 192 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2079 279 SUPERFAMILY DNA-binding domain 141 201 IPR016177 GO:0003677(InterPro)
Tan01g2079 279 SMART rav1_2 141 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2079 279 MobiDBLite consensus disorder prediction 210 234 - -
Tan01g2079 279 ProSiteProfiles AP2/ERF domain profile. 141 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2079 279 CDD AP2 140 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0440 Tan-Chr1:4081713 Tan01g2079 Tan-Chr1:23845653 1.20E-41 dispersed
Tan01g2079 Tan-Chr1:23845653 Tan07g1882 Tan-Chr7:70388393 9.50E-83 dispersed
Tan01g2077 Tan-Chr1:23785440 Tan01g2079 Tan-Chr1:23845653 8.40E-25 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26412 PF00847 AP2 1.20E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2079 K09286 - csv:101203663 419.083