Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2079 | ATGATGTATGGACAGAGTAATGGCTGTGAATCGGATTTTGTTCTTCTGGAATCCATTCGGCGGCATTTGTTGGGAGATTCCGATGCTCTCCGATTTGGGAATTTCGGAACCGCCGCGCCGGTTTTCTGCCGGAGCTCCAGTTTCGGCAGTTTGTACCCTTGTTTGACTGAAAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCTGAGGATATGGTCCTCGCCGGAGTCCTCCGCGATGCCGTCCGGGTCGGTTGGGTTCCGTCGCTTGGATCGTCGTCGCCAGAGACCTTCAATTTTGATTTCTCCGATGTCAAGCCGGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTTATGGAGACGAAGGTGGTGGCGGCGCCGTTGCCGGCAGTGGTTCCGGCGAAGGGGAAGCATTACCGGGGTGTTCGACAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATCCGTGACCCGGCAAAAAACGGGGCTCGGGTTTGGCTTGGGACGTTTGAGACGGCGGAGGATGCGGCGTTGGCTTACGACCGCGCCGCTTATCGGATGCGCGGCTCTAAAGCTCTTCTCAATTTCCCACTTCGGGTTAATTCGGGTGAACCCGACCCGGTTAGAGTGACGTCGAAGCGGTCGTCACCCCGATCATCGCCGGAGCCTACTTCTTCGTCGTCATCGGTGGAAAGTGGGTCCCCGAAGCGGCGGAAGAAGGCGGACGGCACGGCGATTGCTGTGGCCGCGCCGGAGTTGATACAATTGGTGGTGGGGACCAATGCAATGCAAGTGGAAGCTGACGTGGCAAAGTGTACAAGTGGCGAGCAATGA | 840 | 57.86 | MMYGQSNGCESDFVLLESIRRHLLGDSDALRFGNFGTAAPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVLAGVLRDAVRVGWVPSLGSSSPETFNFDFSDVKPEPEILPPVNILPEVMETKVVAAPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSSSSVESGSPKRRKKADGTAIAVAAPELIQLVVGTNAMQVEADVAKCTSGEQ | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23845653 | 23846947 | + | Tan0000943.1 | Tan01g2079 | 739503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2079 | 279 | FunFam | Ethylene-responsive transcription factor 2 | 140 | 200 | - | - | |
Tan01g2079 | 279 | Gene3D | AP2/ERF domain | 140 | 202 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2079 | 279 | PRINTS | Ethylene responsive element binding protein signature | 165 | 181 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2079 | 279 | PRINTS | Ethylene responsive element binding protein signature | 142 | 153 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2079 | 279 | MobiDBLite | consensus disorder prediction | 205 | 245 | - | - | |
Tan01g2079 | 279 | PANTHER | DNA-BINDING DOMAIN | 123 | 231 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Tan01g2079 | 279 | Pfam | AP2 domain | 141 | 192 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2079 | 279 | SUPERFAMILY | DNA-binding domain | 141 | 201 | IPR016177 | GO:0003677(InterPro) | |
Tan01g2079 | 279 | SMART | rav1_2 | 141 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2079 | 279 | MobiDBLite | consensus disorder prediction | 210 | 234 | - | - | |
Tan01g2079 | 279 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 199 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan01g2079 | 279 | CDD | AP2 | 140 | 199 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g0440 | Tan-Chr1:4081713 | Tan01g2079 | Tan-Chr1:23845653 | 1.20E-41 | dispersed | |
Tan01g2079 | Tan-Chr1:23845653 | Tan07g1882 | Tan-Chr7:70388393 | 9.50E-83 | dispersed | |
Tan01g2077 | Tan-Chr1:23785440 | Tan01g2079 | Tan-Chr1:23845653 | 8.40E-25 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26412 | PF00847 | AP2 | 1.20E-14 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2079 | K09286 | - | csv:101203663 | 419.083 |