Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2093 | ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTGTGGCGTAATGGGCCTCCCGATAAGCCAGTGTTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCTCGGGCAGATCCTGATGAGTATGATGATAAAAGGATTTCTAGGTTGAAGAACTTGTCAATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATAATGGAGTTGTGGTTGGGCTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGACACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCCGAGAGCTGTGCACAATTTGGTGGTGCGGATGCAAGTGATCTGACAGGTCCCTCACAGTCTACAGCTTGGGAGACGTTGGTGCCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACCGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAGTGAAGCTCCAATGGTTTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCTTATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATCGGGAGAAAGCACTCTAATGGGCAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAACTGCAAGCACTTGGAAATCATAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAGTTGACAAGTGAAGACCAACGAGAATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCACCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTATGAAAAGAGAAGACTGCAAGACTTTGAGTAGACTTGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTAGTGGAGAGGCTGTTCAAGGTTTTGCTGCCGCATCTAGTAGCTTCATTAATGGAAAGAGATTGTTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAGGACTGCAATGAAGAGTCCGAAAAGGGTGATGACGAAGACAAGCATGGAAAGCAAGGAACTCGTTGATAGCGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTACACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGATCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTCCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTCGGTCCGCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA | 1620 | 43.46 | MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNGVVVGLIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWETLVPSRKRTCVSRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESEAPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEAYSESSILPVHYETENKVVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKHLLTEGVFDFSFPGMKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSSGEAVQGFAAASSSFINGKRLFDGQNKKFSETRTAMKSPKRVMTKTSMESKELVDSDGSCFSPRSLFALPSDGGSYTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGPQQASNSSSSVNLRLMHR | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24037150 | 24045473 | + | Tan0001729.1 | Tan01g2093 | 739517 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2093 | 539 | Pfam | Asx homology domain | 285 | 368 | IPR028020 | - | |
Tan01g2093 | 539 | Gene3D | - | 290 | 378 | IPR038108 | - | |
Tan01g2093 | 539 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 45 | - | - | |
Tan01g2093 | 539 | SMART | GATA_3 | 1 | 55 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g2093 | 539 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
Tan01g2093 | 539 | Gene3D | - | 3 | 84 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Tan01g2093 | 539 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g2093 | 539 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 371 | IPR044589 | - | |
Tan01g2093 | 539 | MobiDBLite | consensus disorder prediction | 110 | 124 | - | - | |
Tan01g2093 | 539 | MobiDBLite | consensus disorder prediction | 520 | 539 | - | - | |
Tan01g2093 | 539 | FunFam | GATA transcription factor 27 | 3 | 85 | - | - | |
Tan01g2093 | 539 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan01g2093 | 539 | ProSiteProfiles | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 296 | 405 | IPR044867 | - | |
Tan01g2093 | 539 | CDD | ZnF_GATA | 6 | 51 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2093 | Tan-Chr1:24037150 | Tan01g2094 | Tan-Chr1:24037150 | 8.10E-256 | tandem | |
Tan01g2093 | Tan-Chr1:24037150 | Tan07g1894 | Tan-Chr7:70486667 | 2.80E-192 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26413 | PF13919 | ASXH | 1.30E-08 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2093 | - | - | - | 0.0 |