Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2093 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTGTGGCGTAATGGGCCTCCCGATAAGCCAGTGTTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCTCGGGCAGATCCTGATGAGTATGATGATAAAAGGATTTCTAGGTTGAAGAACTTGTCAATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATAATGGAGTTGTGGTTGGGCTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGACACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCCGAGAGCTGTGCACAATTTGGTGGTGCGGATGCAAGTGATCTGACAGGTCCCTCACAGTCTACAGCTTGGGAGACGTTGGTGCCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACCGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAGTGAAGCTCCAATGGTTTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCTTATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATCGGGAGAAAGCACTCTAATGGGCAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAACTGCAAGCACTTGGAAATCATAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAGTTGACAAGTGAAGACCAACGAGAATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCACCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTATGAAAAGAGAAGACTGCAAGACTTTGAGTAGACTTGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTAGTGGAGAGGCTGTTCAAGGTTTTGCTGCCGCATCTAGTAGCTTCATTAATGGAAAGAGATTGTTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAGGACTGCAATGAAGAGTCCGAAAAGGGTGATGACGAAGACAAGCATGGAAAGCAAGGAACTCGTTGATAGCGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTACACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGATCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTCCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTCGGTCCGCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1620 43.46 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNGVVVGLIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWETLVPSRKRTCVSRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESEAPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEAYSESSILPVHYETENKVVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKHLLTEGVFDFSFPGMKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSSGEAVQGFAAASSSFINGKRLFDGQNKKFSETRTAMKSPKRVMTKTSMESKELVDSDGSCFSPRSLFALPSDGGSYTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGPQQASNSSSSVNLRLMHR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24037150 24045473 + Tan0001729.1 Tan01g2093 739517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2093 539 Pfam Asx homology domain 285 368 IPR028020 -
Tan01g2093 539 Gene3D - 290 378 IPR038108 -
Tan01g2093 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Tan01g2093 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2093 539 MobiDBLite consensus disorder prediction 102 124 - -
Tan01g2093 539 Gene3D - 3 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan01g2093 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2093 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Tan01g2093 539 MobiDBLite consensus disorder prediction 110 124 - -
Tan01g2093 539 MobiDBLite consensus disorder prediction 520 539 - -
Tan01g2093 539 FunFam GATA transcription factor 27 3 85 - -
Tan01g2093 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2093 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Tan01g2093 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2093 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2093 Tan-Chr1:24037150 Tan01g2094 Tan-Chr1:24037150 8.10E-256 tandem
Tan01g2093 Tan-Chr1:24037150 Tan07g1894 Tan-Chr7:70486667 2.80E-192 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan06g2340 . 6 262 C2C2-Gata Transcription Factor Family AT3G24050 51.3 5.4e-54 208.8
Tan02g2548 . 76 369 C2C2-Gata Transcription Factor Family AT5G25830 52.6 7.9e-68 255.0
Tan01g3930 . 39 345 C2C2-Gata Transcription Factor Family AT5G25830 50.9 9.6e-66 248.1
Tan04g2676 . 96 271 C2C2-Gata Transcription Factor Family AT3G60530 50.5 4.4e-44 175.6
Tan01g1282 . 69 379 C2C2-Gata Transcription Factor Family AT5G66320 50.3 1.1e-67 254.6
Tan01g1282 . 105 379 C2C2-Gata Transcription Factor Family AT3G51080 52.3 5.0e-56 215.7
Tan03g2048 . 103 273 C2C2-Gata Transcription Factor Family AT4G36240 51.4 6.5e-40 161.8
Tan07g1894 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.7 8.0e-136 481.5
Tan01g2093 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.1 1.0e-135 481.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26413 PF13919 ASXH 1.30E-08 No_clan Tan TF