Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2093 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTGTGGCGTAATGGGCCTCCCGATAAGCCAGTGTTGTGCAATGCATGTGGATCTCGATGGAGGACGAAGGGAACTCTTGCAAACTATACCCCTCTTCATGCTCGGGCAGATCCTGATGAGTATGATGATAAAAGGATTTCTAGGTTGAAGAACTTGTCAATGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCAGTATCAAGATAATGGAGTTGTGGTTGGGCTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGACACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCCGAGAGCTGTGCACAATTTGGTGGTGCGGATGCAAGTGATCTGACAGGTCCCTCACAGTCTACAGCTTGGGAGACGTTGGTGCCTTCTAGAAAGAGGACCTGTGTCAGTCGTCCAAAGTCTACCGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCTTACTTCTCTGGATCTTCCGAGGAGGATTTGCTTTTTGAGAGTGAAGCTCCAATGGTTTCTGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCTTATTCAGAGTCGTCCATCCTTCCTGTACATTATGAAACTGAGAACAAGGTTGTAAATTTTTCTACTCTTGGAATCGGGAGAAAGCACTCTAATGGGCAGGGGTTCTTGCAGGAGCAAATTAAAAGGGACAGGCCTCAATCAGAAAAACTGCAAGCACTTGGAAATCATAATTCGCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTATGAAGCAGTTGACAAGTGAAGACCAACGAGAATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCTCAATTCAAGGAGAATTTGAATTCTTTTAAGCACCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTATGAAAAGAGAAGACTGCAAGACTTTGAGTAGACTTGTGTTGTGGGATTTGTCAAAATCAAAATGGGTGGAACGATATGATCTACTTAAGAAATGTAGTAGTGGAGAGGCTGTTCAAGGTTTTGCTGCCGCATCTAGTAGCTTCATTAATGGAAAGAGATTGTTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAGGACTGCAATGAAGAGTCCGAAAAGGGTGATGACGAAGACAAGCATGGAAAGCAAGGAACTCGTTGATAGCGATGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTACACACTGGAATCTCTGCATTTTGATGAGGATAGTTCTGATCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTCCCACAAGCAGAGCTCCTTCATCCAGCCCTGAGTTTCGGTCCGCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1620 43.46 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMYKNKEVKLLKRKQYQDNGVVVGLIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWETLVPSRKRTCVSRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESEAPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSVNEAYSESSILPVHYETENKVVNFSTLGIGRKHSNGQGFLQEQIKRDRPQSEKLQALGNHNSPLCNIDLTDILNFREFMKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKHLLTEGVFDFSFPGMKREDCKTLSRLVLWDLSKSKWVERYDLLKKCSSGEAVQGFAAASSSFINGKRLFDGQNKKFSETRTAMKSPKRVMTKTSMESKELVDSDGSCFSPRSLFALPSDGGSYTLESLHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFGPQQASNSSSSVNLRLMHR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24037150 24045473 + Tan0001729.1 Tan01g2093 739517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2093 539 Pfam Asx homology domain 285 368 IPR028020 -
Tan01g2093 539 Gene3D - 290 378 IPR038108 -
Tan01g2093 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Tan01g2093 539 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2093 539 MobiDBLite consensus disorder prediction 102 124 - -
Tan01g2093 539 Gene3D - 3 84 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Tan01g2093 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2093 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 371 IPR044589 -
Tan01g2093 539 MobiDBLite consensus disorder prediction 110 124 - -
Tan01g2093 539 MobiDBLite consensus disorder prediction 520 539 - -
Tan01g2093 539 FunFam GATA transcription factor 27 3 85 - -
Tan01g2093 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan01g2093 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Tan01g2093 539 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2093 Tan-Chr1:24037150 Tan01g2094 Tan-Chr1:24037150 8.10E-256 tandem
Tan01g2093 Tan-Chr1:24037150 Tan07g1894 Tan-Chr7:70486667 2.80E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26413 PF13919 ASXH 1.30E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2093 - - - 0.0