Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2132 ATGCTTCAAGAGATTGGTTTCAATGGTGGGGTTCCAATTGATGAGGACTTTTTCATTAAAAATGTTGCTGGAAAGCATAACGATGATATTGCCCGAGCGATTTTCCCTGATGATTACGAACGAGGTTTGAAATTTTGCGATGAGAAGGAGGCTATGTTTAGGAGATTGGTTACTGAACAATTAAAGCCCGTTAATGGCTTGTATAAAGTGAAGAAATGGATAGAAGATCGTGGATTAAAACGTGCTGCAGTTACAAATGCCCCTCGGGCAAATGCCGAGCTCATGATCTCCATGCTTGGTCTTACGGATTTTTTCGAGGCTGTTATTATAGGCGGTGAATGTGAGCATGCTAAACCACATCCACAACCATATTTAAAGGCTCTTGAAGTACTCAAAGTGTCAAAGGATCACACTTTCATTTTTGAGGACTCTGTATCAGGGATCAAAGCTGGAGTGGCAGCCGAGATGCCTGTCGTCGGTATAGCTACGAGAAATCCCGAGGACTTGTTGATGCAAGCAAAGCCTGCCCTCCTTGTAAAGGACTACGACGATCCCAAATTGTGGGCAGCTTTGGACGAACTCGATAAGAGAGGAGGTAGCATTAACAAGGCATGA 615 43.74 MLQEIGFNGGVPIDEDFFIKNVAGKHNDDIARAIFPDDYERGLKFCDEKEAMFRRLVTEQLKPVNGLYKVKKWIEDRGLKRAAVTNAPRANAELMISMLGLTDFFEAVIIGGECEHAKPHPQPYLKALEVLKVSKDHTFIFEDSVSGIKAGVAAEMPVVGIATRNPEDLLMQAKPALLVKDYDDPKLWAALDELDKRGGSINKA 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24628048 24631346 - Tan0018794.2 Tan01g2132 739556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2132 204 CDD HAD_BPGM-like 39 163 - -
Tan01g2132 204 Gene3D - 60 184 IPR023214 -
Tan01g2132 204 NCBIfam HAD-IA family hydrolase 59 161 IPR006439 -
Tan01g2132 204 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 193 IPR051600 -
Tan01g2132 204 Gene3D Putative phosphatase; domain 2 12 59 IPR023198 -
Tan01g2132 204 SUPERFAMILY HAD-like 10 194 IPR036412 -
Tan01g2132 204 Pfam Haloacid dehalogenase-like hydrolase 19 160 IPR041492 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2132 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2132 Tan-Chr1:24628048 Tan06g2228 Tan-Chr6:72982767 8.00E-63 dispersed
Tan01g2131 Tan-Chr1:24628048 Tan01g2132 Tan-Chr1:24628048 7.60E-116 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g623 . . . . . . . . . . . . . . . . . Bhi11g00109 Tan01g2132 . . Hepe06g1060 . . . . . . . . . . Cone12ag0439 . . Lsi07g01232 . . Cme06g02501 . . . . . . . Bma12g00258 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00206 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66