Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2147 ATGGATTCACGGGAGAGGTCGATGCCCTCTCTTCATCAACCTCAGCCTCAATCCACTCCACCCAACAGGATGATGAGCAACGCTTCGTATTCCACCAATTTGCCCAACACCAACAATACTTCGCCATTGATCAACCCCAATTCCGCAGCTGCTCAGATGATGTCGTCCGCATCGCGATTTCCGTTCAACTCCATGATGGGGTCTGCCTCTAAGCCCTCGGAGTCGCCTAATGCCGGTTCTTATGACGGATCGCATTCCGAATTGCGGACTGGTGGGTTTAACATTGATTCCGGGAAGAAGAAGAGAGGCCGCCCGAGGAAGTATTCGCCTGATGGCAACATCGCTTTGGGCCTAGCGCCAACCCCCATCACTTCTTCCGCCGTTCCCAGTGATTCTGCCGGCATGCACTCGCCGGATCCTCGCCCAAAGAAGAACAGGGGACGGCCGCCCGGTACTGGGAAGAGGCAGATGGATGCTTTGGGAACCGGTGGTGTTGGCTTTACTCCTCATGTCATTTTGGTGAAACCAGGAGAGGACATTGCCTCGAAAGTTGTGGCATTTTCACAACAGGGGCCTCGGACTGTTTGTATTCTCTCTGCCCATGGTGCTGTCTGCAATGTTACCCTTCACCAACCCGCAATGACAGCTGGTAGTGTGACATATGAGGGTCGATATGAAATCATCTCTCTATCAGGCTCCTTCTTGATCTCTGACAGTAATGGTAATCGAAGTCGAACTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGCCAAGTTCTTGGTGGAATTACCAACATGCTAACAGCAGCATCAACAGTTCAGGTTATAGTGGGTAGCTTTCTCGTGGATGGAAAAAAGCTGGGCTCAAGTATACAGAAATCTGGGGCATCTTCTACATCACCCAATATGTTAAACTTTAGTGCACCAGCAGCAACGGGCTGTCCCTCTGAAGGTGCATCAAATAATTCATCCGATGACAACGGTGGTAGCCCTTTAAGCCGGGGCCCTGGAATCTACACAAATGCCAACCAACCAATTCATAATATGCAGATGTATCAATTATGGGGTAGTCGAAATCAATAA 1086 50.09 MDSRERSMPSLHQPQPQSTPPNRMMSNASYSTNLPNTNNTSPLINPNSAAAQMMSSASRFPFNSMMGSASKPSESPNAGSYDGSHSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLAPTPITSSAVPSDSAGMHSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVVAFSQQGPRTVCILSAHGAVCNVTLHQPAMTAGSVTYEGRYEIISLSGSFLISDSNGNRSRTGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGSSIQKSGASSTSPNMLNFSAPAATGCPSEGASNNSSDDNGGSPLSRGPGIYTNANQPIHNMQMYQLWGSRNQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25070130 25081163 + Tan0008920.1 Tan01g2147 739571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2147 361 MobiDBLite consensus disorder prediction 8 84 - -
Tan01g2147 361 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Tan01g2147 361 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Tan01g2147 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 282 - -
Tan01g2147 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 281 IPR005175 -
Tan01g2147 361 MobiDBLite consensus disorder prediction 1 161 - -
Tan01g2147 361 ProSiteProfiles PPC domain profile profile. 163 303 IPR005175 -
Tan01g2147 361 CDD DUF296 168 281 IPR005175 -
Tan01g2147 361 Gene3D - 169 299 - -
Tan01g2147 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 331 IPR039605 GO:0003680(InterPro)
Tan01g2147 361 MobiDBLite consensus disorder prediction 292 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2147 Tan-Chr1:25070130 Tan07g1968 Tan-Chr7:71451940 8.80E-81 dispersed
Tan01g2147 Tan-Chr1:25070130 Tan01g2148 Tan-Chr1:25087029 1.20E-13 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2147 - - - 0.0