Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2148 ATGGCTGGATTGGATTTAGGAAGTCGATATCTAACTCATCTCCAAGCGTCTGTAGATGATCCTGCAAATCGCGGGGCTCATTTCTCCTCCAGCGACCACCAAGACGACGACGATCCCCACCAAGCCCTAGTCGGCCCCGGGGATGTCGTAGGCCGCCGTCCCCGTGGCCGGCCACCGGGTTCGAAGAACAAGCCAAAGCCGCCGGTTATCATCACTCGCGAGAGTGCCAACACGCTTCGTGTCCACATCTTAGAGGTCGGTAGCGGCTGCGACGTCTTCGATTGCATCGCTGCCTACGCCCGCCGACGACAGCGTGGGATCTGTATTTTGAGCGGCAGCGGTAACGTCACCAACGTCGGCCTCCGCCAGCCTGCAGCGGCGGGGGCGGTGTTGACCCTTCACGGGAGGTTTGAGATTTTGTCGCTCTCTGGATCGTTTCTTCCGCCGCCTGCTCCGCCCGGCGCCACCAGTTTGACGATATTTTTGGCCGGAGGGCAGGGGCAGGTGGTTGGTGGGACGGTGGCCGGAGAATTAACGGCGGCCGGGCCGGTGATTTTGATTGCAGCTTCGTTTACTAATGTGGCGTATGAGAGATTACCACTGGATGAGGAGGATCAGCAGCAAGCTCCGGCGGCAGTCAACGGCGGAGGCGGCGGAGTTGGTGGCGGCGACAACAACAACAACCCATTTCAAGACCCATCAAATTCAGGACTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAGCTTCCACCTTTCTGA 768 58.07 MAGLDLGSRYLTHLQASVDDPANRGAHFSSSDHQDDDDPHQALVGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCIAAYARRRQRGICILSGSGNVTNVGLRQPAAAGAVLTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQAPAAVNGGGGGVGGGDNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25087029 25088484 - Tan0013623.1 Tan01g2148 739572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2148 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 242 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g2148 255 MobiDBLite consensus disorder prediction 209 238 - -
Tan01g2148 255 MobiDBLite consensus disorder prediction 17 70 - -
Tan01g2148 255 MobiDBLite consensus disorder prediction 224 238 - -
Tan01g2148 255 CDD DUF296 80 191 IPR005175 -
Tan01g2148 255 Gene3D - 79 209 - -
Tan01g2148 255 FunFam AT-hook motif nuclear-localized protein 79 206 - -
Tan01g2148 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 192 IPR005175 -
Tan01g2148 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 206 - -
Tan01g2148 255 PIRSF ESCAROLA 7 252 IPR014476 GO:0003680(InterPro)
Tan01g2148 255 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2148 Tan-Chr1:25087029 Tan07g1966 Tan-Chr7:71441659 7.40E-82 dispersed
Tan01g2147 Tan-Chr1:25070130 Tan01g2148 Tan-Chr1:25087029 1.20E-13 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2148 - - - 0.0