Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2165 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCTTCCCGCCGACAATCCCGACCTCCTCTTCTCCGCCTCCGATCCTCTCGACGAAACCCTAGGCCACTCCTTCTGCTACGTCCGCTCTTCCAACCGCTTCCTCTCTCCCTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCCCTCCGTTTTTCCCCTCCTCACGAACCGCCCCTCGTGACTAGGACTAGAACTGGCCCACCGGAGACCGCCTTCAAGGCCATCTCCGGCGCTTCTGTGAGTGCCAACAGTTCTATTCCCAGATCTGTTCTTATGCTCGATGGTGTTTACGACGATGCCAATGACACTGCGCTTGGGGCTTCCGGTGGTGGTTGTGGAGTCAGAGGGAATATTTTGAATGGCTTTGAGAGTACTTCTTCTTTTACTGCTCTTCCGCTTCAGCCCGTTCCGAGAGGTGGGACTGAGCCGTTGGAGCGTGGTGGCTTCTTTCTCTCTGGTCCAATTGAGCGCGGGGCGCTTTCTGGTCCTCTTGATGCGAATGTTGATGGTGCTGCTGCTGTTGCTGCCGGTGCTGCTGCAAGCGGTGGTGGGAGAGTTCATTTCTCCGCTCCGCTTGGTGGGATGTACGTCAAGAAGAAGAGGAAGAAAAGCATTTCGGGGTTTAGGAAGGCGTTTACGAGGAATTTTTCCGATAAGCGGCCGTGGGTGGTGCCGGTATTGAATTTCGTTGGCCGGAAGGAGAGCTCGACGGCGGGTGATGAGTCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCGCTTGGGAAGGCTGGGGAGGATCGTGTACATGTGGTTGTATCGGAGGAGCAAGGGTGGTTGTTTGTTGGTATTTATGATGGGTTTAATGGCCCTGATGCGCCTGAATTCTTGATGGGGAATCTCTATAGGGCAGTCTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGATGATAGCGAGGAGGCTGCTGCTAATGTGGTTGCAGAGAGTACGGTCAGTGTGAATGAAACTAATGCTGACCCATCTACGAGAGCCTCTGGTCAAATGGTTGAAACTAATGGGAGTGTTTCAGCAGTTGGAAATGAAGGGGAAGTGGAACAACTGGCTGCTGATCGAGGATCAGTGAAGAGGGTTACATTTCAATCTGAAGATGGATCAGAGAATAGGCGGAGGCGACGTCTGTGGGAGTATTTAGCAGAGGACGATACACAGGATGGACTTGATCTTTCGGGTTCGGATAGATTTGCATTTTCGGTCGATGATGCACTTAGTGTAAATAGTGCGGGTTCAGTAGCTGGTAGAAGGTGGCTGTTATTGTCCAAGTTAAAACAAGGGTTGTCAAAGCATAAGGAGGGTCATGTTAAGACTTTGTTCCCATGGAAGTATGGTTTGGGAGATAAAGAGAAGGTTGAGGCTGAGAATAGGGTGGAGGAGACATCTTATCGAAGTGGTAAGAAGAGAAAGGAAGGTTTAATTGATCATGAGTTGGTGTTGGGGGCATTGTCAAGGGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACTGATAAGTTGCTTGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATGTGGGTGACAGCCGTGCTATTGTTGCACAGTATGAGCAACAAGAAGTTGGTCCAAGTGAAGACTCGAAAGAGGAAGGCAACAAAAGAACAGGCATGGAGGGTATAATTGAGGAGTCTACAGCAATGAGTGAAGGGAAAATAACTCAAACAAACCAACCTTTGGCGCAGGTGATGAGATTAACTGCATTGCAGCTATCCACCGATCATAGCACAAGCATTGAAGAGGAAGTAAAAAGAATAAAGAATGAGCACCCTGATGACAAACAATGCATTGTCAACGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCAGGATTTTTGAAACAGCCAAAGTTGAACGATGCATTATTGGAAATGTTTCGGAATGAGTATATTGGTACTGCACCATATTTATCTTGCATGCCTTCTCTTCGTCACCATAGACTCTGCCCCACAGATCAATTCATCGTGCTCTCATCTGATGGGTTGTATCAATATCTAACCAATGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCCAGAAAAGCAGGAATGGATTTTCATGAATTGTTGGACATCCCACACGGGGATCGGAGGAAGTATCATGATGACGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2409 48.15 MGSGVSSLFSCLKPETRPAALPADNPDLLFSASDPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHEPPLVTRTRTGPPETAFKAISGASVSANSSIPRSVLMLDGVYDDANDTALGASGGGCGVRGNILNGFESTSSFTALPLQPVPRGGTEPLERGGFFLSGPIERGALSGPLDANVDGAAAVAAGAAASGGGRVHFSAPLGGMYVKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFVGRKESSTAGDESEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDSEEAAANVVAESTVSVNETNADPSTRASGQMVETNGSVSAVGNEGEVEQLAADRGSVKRVTFQSEDGSENRRRRRLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHVKTLFPWKYGLGDKEKVEAENRVEETSYRSGKKRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYEQQEVGPSEDSKEEGNKRTGMEGIIEESTAMSEGKITQTNQPLAQVMRLTALQLSTDHSTSIEEEVKRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCMPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPHGDRRKYHDDVTVMVISLEGRIWKSSGKYL 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25277894 25283768 - Tan0007592.1 Tan01g2165 739589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2165 802 SMART PP2C_4 263 788 IPR001932 -
Tan01g2165 802 Gene3D - 249 797 IPR036457 -
Tan01g2165 802 Pfam Protein phosphatase 2C 623 753 IPR001932 -
Tan01g2165 802 Pfam Protein phosphatase 2C 520 575 IPR001932 -
Tan01g2165 802 MobiDBLite consensus disorder prediction 64 86 - -
Tan01g2165 802 SUPERFAMILY PP2C-like 275 791 IPR036457 -
Tan01g2165 802 CDD PP2Cc 501 790 IPR001932 -
Tan01g2165 802 PANTHER PROTEIN PHOSPHATASE 2C 270 790 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Tan01g2165 802 ProSiteProfiles PPM-type phosphatase domain profile. 263 790 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2165 Tan-Chr1:25277894 Tan03g0949 Tan-Chr3:65987928 3.80E-124 dispersed
Tan01g2165 Tan-Chr1:25277894 Tan05g0390 Tan-Chr5:2812307 9.00E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2165 - - - 0.0