Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2188 ATGACGGATTATCGTTTATCAACCATGAATCTCTGGACCGACGAGAACGCGTCGGTCATGGACGCTTTCATGAATTCCGATCTGTCCTCTTACTGGGCTCCATCGGCGGCGTCGTCTCACTCTCTCCACCACCCACCGCCGCCGCAGTCCTCCGCCTCCACCTCCACTCCGCCACCCGACCCACCCAAGTCCCTCGCCGTCTTCAACCAGGAGACTCTGCAGCAGCCCCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGTTGGACCTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGCGGGCCGGTTTTGGGGTGGGGAGATGGATATTACAAAGGGGAGGAGGACAAAGGGAAGGGAAAAGCGAAAATGGTTTCGTCTGCGGTGGAGCAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCTTTGATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGACACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTGCCGAGTCAGGCGTTTTTCAGCTCCACGCCGATTTGGATCTCCGGCGCCGACCGCCTCTCGGCGTCGTCCTGTGATCGGGCCAGACAGGGGAGAGTTTTCGGGTTGCAGACGATGGTCTGTATTCCATCGCCAAACGGCGTCGTCGAAATGGGTTCAACTGAATTGATTCACAGAACGTCCGATTTGATGAACAAGGTCAAGACGTTGTTCAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGGCACCACCGCCGCAACCGCCGCCGACGAAGGGGAAAACGACCCGTCGTCGTTGTGGATCAGTGAGCCGTCGAGCACAATCGAGATGAAGGACTCAATCACCACCACCGTCCTTTCCGGAGTCGCTCCGGCCAAGCCAATCCATTCGGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATCTCAGCACGATTCAACAACCACCCCATCAAAAACAGAGCCAAAGCTTCTTGAATTTCTCCGATTATGGCTTCGAATCAAATCCCTCAAAAACCGCCGCCGCGACCACCGCCGCGAACACCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAACGGGAGCCTCTTATCTGGCCACTCACAGTACATGACAGACGAACAGAACGAGAAAAAGAGATCCCCTGCATCTCGGAGCAGCAACGAGGAAGGGATCCTGTCATTTACCTCCGGCGTGATCTTACCCTCCTCCGGAAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTCGAAGCTTCGGTGATCCGAGAAGTAGATAGCTGTACAAAAGCATTAGAACCAGAAAAACGACCAAGAAAACGAGGGCGAAAACCGGCAAACGGAAGAGAAGAGCCATTGAATCACGTGGAAGCAGAGAGACAACGGCGTGAGAAACTAAACCAGAAATTCTACGCTCTCCGGGCCGTGGTTCCAAACGTATCAAAAATGGACAAAGCCTCGCTGCTGGGCGACGCGGTTTCGTACATCAACGAGTTGAAATCGAAGCTCCAAATGGCGGAATCGGAGAAGACGGAGATGGGAAAACAGCTAGAGTTTCTGAAAAAGGACACGGGAGGGAAAGAATTAGGAAACTACACGAACCCAATGGATCAAGATCTGAAGATGGGGAACAGAAAGGCAATGGAGATGGAGATAGAAGTGAAAATAATGGGTTGGGATGCAATGATCAGAATTCAAAGCAGCAAAAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGCTTCACGCAAGTGTTTCTGTAGTGAACGATCTGATGATTCAACAGGCGGCAGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTGAAAATGGCGCTCATCGCCCGAGTCGGCGGAGGAAGCCATGGATTGATGTAG 1971 53.12 MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLAVFNQETLQQPLQALIDGARESWTYAIFWQSSYDYSGGPVLGWGDGYYKGEEDKGKGKAKMVSSAVEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSTPIWISGADRLSASSCDRARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKTLFNFNNLETGSWQSGTTAATAADEGENDPSSLWISEPSSTIEMKDSITTTVLSGVAPAKPIHSENPSSSSLTENLSTIQQPPHQKQSQSFLNFSDYGFESNPSKTAAATTAANTTTPSFKPESGGMLNFGNGSLLSGHSQYMTDEQNEKKRSPASRSSNEEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKALEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQMAESEKTEMGKQLEFLKKDTGGKELGNYTNPMDQDLKMGNRKAMEMEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALIARVGGGSHGLM 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25750967 25753756 - Tan0015748.1 Tan01g2188 739612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2188 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983(InterPro)
Tan01g2188 656 MobiDBLite consensus disorder prediction 425 444 - -
Tan01g2188 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 475 541 IPR036638 GO:0046983(InterPro)
Tan01g2188 656 PANTHER MYC 60 647 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Tan01g2188 656 MobiDBLite consensus disorder prediction 450 482 - -
Tan01g2188 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Tan01g2188 656 MobiDBLite consensus disorder prediction 353 412 - -
Tan01g2188 656 MobiDBLite consensus disorder prediction 306 338 - -
Tan01g2188 656 Pfam Helix-loop-helix DNA-binding domain 476 522 IPR011598 GO:0046983(InterPro)
Tan01g2188 656 MobiDBLite consensus disorder prediction 353 373 - -
Tan01g2188 656 Coils Coil 518 545 - -
Tan01g2188 656 Gene3D - 471 547 IPR036638 GO:0046983(InterPro)
Tan01g2188 656 MobiDBLite consensus disorder prediction 313 338 - -
Tan01g2188 656 FunFam Transcription factor bHLH13 465 539 - -
Tan01g2188 656 MobiDBLite consensus disorder prediction 36 62 - -
Tan01g2188 656 CDD bHLH_AtAIB_like 469 544 - -
Tan01g2188 656 SMART finulus 478 527 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2188 Tan-Chr1:25750967 Tan07g2244 Tan-Chr7:73849917 9.50E-33 dispersed
Tan01g2295 Tan-Chr1:27579115 Tan01g2188 Tan-Chr1:25750967 8.80E-41 transposed
Tan07g2327 Tan-Chr7:74492889 Tan01g2188 Tan-Chr1:25750967 4.10E-07 transposed
Tan10g0111 Tan-Chr10:1311704 Tan01g2188 Tan-Chr1:25750967 2.60E-64 transposed
Tan01g2188 Tan-Chr1:25750967 Tan07g1978 Tan-Chr7:71506523 2.90E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26425 PF14215 bHLH-MYC_N 1.10E-52 CL0161 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2188 K13422 - csv:101205372 1080.09