Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2188 | ATGACGGATTATCGTTTATCAACCATGAATCTCTGGACCGACGAGAACGCGTCGGTCATGGACGCTTTCATGAATTCCGATCTGTCCTCTTACTGGGCTCCATCGGCGGCGTCGTCTCACTCTCTCCACCACCCACCGCCGCCGCAGTCCTCCGCCTCCACCTCCACTCCGCCACCCGACCCACCCAAGTCCCTCGCCGTCTTCAACCAGGAGACTCTGCAGCAGCCCCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGTTGGACCTACGCGATTTTCTGGCAGTCGTCCTATGATTATTCCGGCGGGCCGGTTTTGGGGTGGGGAGATGGATATTACAAAGGGGAGGAGGACAAAGGGAAGGGAAAAGCGAAAATGGTTTCGTCTGCGGTGGAGCAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCTTTGATTTCTGGCTCCGCTGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGACACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTGCCGAGTCAGGCGTTTTTCAGCTCCACGCCGATTTGGATCTCCGGCGCCGACCGCCTCTCGGCGTCGTCCTGTGATCGGGCCAGACAGGGGAGAGTTTTCGGGTTGCAGACGATGGTCTGTATTCCATCGCCAAACGGCGTCGTCGAAATGGGTTCAACTGAATTGATTCACAGAACGTCCGATTTGATGAACAAGGTCAAGACGTTGTTCAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGGCACCACCGCCGCAACCGCCGCCGACGAAGGGGAAAACGACCCGTCGTCGTTGTGGATCAGTGAGCCGTCGAGCACAATCGAGATGAAGGACTCAATCACCACCACCGTCCTTTCCGGAGTCGCTCCGGCCAAGCCAATCCATTCGGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATCTCAGCACGATTCAACAACCACCCCATCAAAAACAGAGCCAAAGCTTCTTGAATTTCTCCGATTATGGCTTCGAATCAAATCCCTCAAAAACCGCCGCCGCGACCACCGCCGCGAACACCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAACGGGAGCCTCTTATCTGGCCACTCACAGTACATGACAGACGAACAGAACGAGAAAAAGAGATCCCCTGCATCTCGGAGCAGCAACGAGGAAGGGATCCTGTCATTTACCTCCGGCGTGATCTTACCCTCCTCCGGAAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTCGAAGCTTCGGTGATCCGAGAAGTAGATAGCTGTACAAAAGCATTAGAACCAGAAAAACGACCAAGAAAACGAGGGCGAAAACCGGCAAACGGAAGAGAAGAGCCATTGAATCACGTGGAAGCAGAGAGACAACGGCGTGAGAAACTAAACCAGAAATTCTACGCTCTCCGGGCCGTGGTTCCAAACGTATCAAAAATGGACAAAGCCTCGCTGCTGGGCGACGCGGTTTCGTACATCAACGAGTTGAAATCGAAGCTCCAAATGGCGGAATCGGAGAAGACGGAGATGGGAAAACAGCTAGAGTTTCTGAAAAAGGACACGGGAGGGAAAGAATTAGGAAACTACACGAACCCAATGGATCAAGATCTGAAGATGGGGAACAGAAAGGCAATGGAGATGGAGATAGAAGTGAAAATAATGGGTTGGGATGCAATGATCAGAATTCAAAGCAGCAAAAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGCTTCACGCAAGTGTTTCTGTAGTGAACGATCTGATGATTCAACAGGCGGCAGTGAAGATGGGGAGCAGATTTTACACACAGGAGCAGCTGAAAATGGCGCTCATCGCCCGAGTCGGCGGAGGAAGCCATGGATTGATGTAG | 1971 | 53.12 | MTDYRLSTMNLWTDENASVMDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDPPKSLAVFNQETLQQPLQALIDGARESWTYAIFWQSSYDYSGGPVLGWGDGYYKGEEDKGKGKAKMVSSAVEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSTPIWISGADRLSASSCDRARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKTLFNFNNLETGSWQSGTTAATAADEGENDPSSLWISEPSSTIEMKDSITTTVLSGVAPAKPIHSENPSSSSLTENLSTIQQPPHQKQSQSFLNFSDYGFESNPSKTAAATTAANTTTPSFKPESGGMLNFGNGSLLSGHSQYMTDEQNEKKRSPASRSSNEEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKALEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQMAESEKTEMGKQLEFLKKDTGGKELGNYTNPMDQDLKMGNRKAMEMEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALIARVGGGSHGLM | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 25750967 | 25753756 | - | Tan0015748.1 | Tan01g2188 | 739612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2188 | 656 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 472 | 521 | IPR011598 | GO:0046983(InterPro) | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 425 | 444 | - | - | |
Tan01g2188 | 656 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 475 | 541 | IPR036638 | GO:0046983(InterPro) | |
Tan01g2188 | 656 | PANTHER | MYC | 60 | 647 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER) | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 450 | 482 | - | - | |
Tan01g2188 | 656 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 253 | IPR025610 | - | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 353 | 412 | - | - | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 306 | 338 | - | - | |
Tan01g2188 | 656 | Pfam | Helix-loop-helix DNA-binding domain | 476 | 522 | IPR011598 | GO:0046983(InterPro) | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 353 | 373 | - | - | |
Tan01g2188 | 656 | Coils | Coil | 518 | 545 | - | - | |
Tan01g2188 | 656 | Gene3D | - | 471 | 547 | IPR036638 | GO:0046983(InterPro) | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 313 | 338 | - | - | |
Tan01g2188 | 656 | FunFam | Transcription factor bHLH13 | 465 | 539 | - | - | |
Tan01g2188 | 656 | MobiDBLite | consensus disorder prediction | 36 | 62 | - | - | |
Tan01g2188 | 656 | CDD | bHLH_AtAIB_like | 469 | 544 | - | - | |
Tan01g2188 | 656 | SMART | finulus | 478 | 527 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2188 | Tan-Chr1:25750967 | Tan07g2244 | Tan-Chr7:73849917 | 9.50E-33 | dispersed | |
Tan01g2295 | Tan-Chr1:27579115 | Tan01g2188 | Tan-Chr1:25750967 | 8.80E-41 | transposed | |
Tan07g2327 | Tan-Chr7:74492889 | Tan01g2188 | Tan-Chr1:25750967 | 4.10E-07 | transposed | |
Tan10g0111 | Tan-Chr10:1311704 | Tan01g2188 | Tan-Chr1:25750967 | 2.60E-64 | transposed | |
Tan01g2188 | Tan-Chr1:25750967 | Tan07g1978 | Tan-Chr7:71506523 | 2.90E-215 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26425 | PF14215 | bHLH-MYC_N | 1.10E-52 | CL0161 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2188 | K13422 | - | csv:101205372 | 1080.09 |