Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2190 ATGGCGACCCATCTGGCTGAATCTCAAGAGCTCGATCGATTTTTGGGTTCTCCGTTGGGAATTGATGGTGGGTCTTGGCCCTCGGCTGGTTCTCAAGCCCTAACTCAACAATCTGTGGTTCCGCCTTCGTCTTTCCGAGATGGGGATTTTTCATTTTCTTCAATTGAGGGTTCTGCTAATCAGTCTTGGGGTTCTTCTTCGATAAACCTTACAGGGTATAATTCTGATGGACTCGAGCCATTGCCCTCTTTGCCCGTTTCTTTGTTCGTCGACGATCCATCGAATGGTACTTTGCCGATTTCGTCTTCTGAGTGGTCTTCTCCAGAGGAAGGTTTCCCAGCGAGTTCAGTGGCTGCCCAAGAAACCAATTCTTTATCAGTGGGTGCGGGGCTTGCAAATTTGGGCAATACTTGTTTTATTAACGCAATCTTGCAGTGTTTCACTCATACTGCTCCATTTGTGGAGGGTCTTCGATCTGCCGATCATGATTTGCCTTGTAACAGGGATGGTGAAGATTTTTGTGTTCTTTGTGCCATTCGAGATCATATCGAGCTTTCATTAACTTCCCTGGGCGGGATTATCTCCCCACTTAAACTTGTCAATAACTTGAGCTATTTCTCATCTTGTTTCCGGAGATACCAGCAGGAAGATGCCCATGAATTCATGCAGTGCTTCTTGGATAAACTTGAAAGATGCTTGCATTCAGAAGCAAAGGATCAGATTTCTTCTGAGGATGATGATCTAGTGAATAAGGTGTTTGGTGGTCGTCTCATAAGCAACCTATGTTGCTGTAATTGTGGCCATTGTTCTGAAACGTATGAGCCTTTGGTTGACCTGAGTTTGGAGATTGAGAATGTAGACTCCCTTTCAAGTGCCTTGGAGTCCTTCACTAAGGTGGAGAGGATTGGTGATCCAGAGATGAAATTTAAGTGTGAAAACTGCAAAGAAGAGGTGTTGGTGGAGAAGCAGCTTAAGCTGGAAAAAATCCCTTTGGTTGTTACATTCCACTTAAAGAGATTCAAGGCTGATAGTTCTTTCATTGAGAAAATCGAAAAGCACATAGAGTTTCCATTAGAGTTAGATTTGCAGCCCTACACCTTGGGAGGCCCGGATGCAGAGGTGGAGCTCAAGTATGAATTATATGCAATTGTGGAGCACACAGGGTTTTCTTCTACTTCTGGGCATTACTTCTGCTTTGTTCGTTCGTCTCCCGAGACCTGGCACAGAATGGATGACTCATTGGTTACTCCGGTGAGTGAAGATTATGTGCTGTCACGGGAGGCCTACATTCTGTTATATAAGAGGAAGGGGATTCCATGGTTCTCAAGTTTAATCCAACAACCAGATCCTTGCTTGAATTCAGATTCCTCAAATCCTTCACCCAAGTCAGTTTTTCAAAGTATCGATGCTGTTCTCCCTTCATTTGCTGCTGAATCTAATGTCAATTGTGAAACCATGAATGCACCTGTGGATACTTTGTGGTCAAATTCTGCTCGGTTCTCTGGTGAAATGGGAGACCAAGAGACTGGTGCCAATGGTTTGGGAAATGCGGACTCTGCCAACTTGCATATACCAGAGAGTGTGACAAATAAGTCTTCTCCCATTGTAAATGAAAACCTCTGTTCAAATGACAAAGATGGATGTATCGATGCTTTTCGTCCTCTATCGCCAATGAGATCTCCCAGTCCTGATATTACTTTCCAGACTCCAGAACCACAATACCGAATTCCAGTCGATCACCTGAAGCCAGAAAAATGCTCAACGTCTGGAAGGCAATTGAACAAGAGTGTGGAAGATTCGGAAAGAAAAGCAGCCCTGAGGTACATTAAAAAGAGCATGCCGGGTTCAAGAGGGTCGAAAATGATTGCTGCCATATTGGGATCTCCAAGTGAAGGCTCATTGAACAAGAAGAAGAGACTAAGGTCATCACCATGTAAAAGGTCGAGCCCGCCTAATAATCGCCGCAAAACAAGTCATAGTTCTGTGATGCGTTTTGTGGCAGCTGAAAACTGA 2013 44.36 MATHLAESQELDRFLGSPLGIDGGSWPSAGSQALTQQSVVPPSSFRDGDFSFSSIEGSANQSWGSSSINLTGYNSDGLEPLPSLPVSLFVDDPSNGTLPISSSEWSSPEEGFPASSVAAQETNSLSVGAGLANLGNTCFINAILQCFTHTAPFVEGLRSADHDLPCNRDGEDFCVLCAIRDHIELSLTSLGGIISPLKLVNNLSYFSSCFRRYQQEDAHEFMQCFLDKLERCLHSEAKDQISSEDDDLVNKVFGGRLISNLCCCNCGHCSETYEPLVDLSLEIENVDSLSSALESFTKVERIGDPEMKFKCENCKEEVLVEKQLKLEKIPLVVTFHLKRFKADSSFIEKIEKHIEFPLELDLQPYTLGGPDAEVELKYELYAIVEHTGFSSTSGHYFCFVRSSPETWHRMDDSLVTPVSEDYVLSREAYILLYKRKGIPWFSSLIQQPDPCLNSDSSNPSPKSVFQSIDAVLPSFAAESNVNCETMNAPVDTLWSNSARFSGEMGDQETGANGLGNADSANLHIPESVTNKSSPIVNENLCSNDKDGCIDAFRPLSPMRSPSPDITFQTPEPQYRIPVDHLKPEKCSTSGRQLNKSVEDSERKAALRYIKKSMPGSRGSKMIAAILGSPSEGSLNKKKRLRSSPCKRSSPPNNRRKTSHSSVMRFVAAEN 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25821425 25825274 + Tan0005109.1 Tan01g2190 739614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2190 670 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 129 436 IPR028889 -
Tan01g2190 670 FunFam Ubiquitin carboxyl-terminal hydrolase 20 125 439 - -
Tan01g2190 670 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 113 499 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Tan01g2190 670 MobiDBLite consensus disorder prediction 16 42 - -
Tan01g2190 670 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 378 396 IPR018200 GO:0004843(InterPro)
Tan01g2190 670 Pfam Ubiquitin carboxyl-terminal hydrolase 129 433 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Tan01g2190 670 Gene3D Cysteine proteinases 127 438 - -
Tan01g2190 670 MobiDBLite consensus disorder prediction 626 670 - -
Tan01g2190 670 MobiDBLite consensus disorder prediction 28 42 - -
Tan01g2190 670 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 130 145 IPR018200 GO:0004843(InterPro)
Tan01g2190 670 SUPERFAMILY Cysteine proteinases 129 435 IPR038765 -
Tan01g2190 670 MobiDBLite consensus disorder prediction 645 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2190 K11855 - - csv:101210383 1000.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2190 Tan-Chr1:25821425 Tan08g0719 Tan-Chr8:7413170 9.30E-68 dispersed
Tan01g2190 Tan-Chr1:25821425 Tan01g3847 Tan-Chr1:103229341 3.60E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46