Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2201 ATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAATACACTTCTTCTTCTTCACCATCGCCATCTTCTTCTTCTTTTTTCTCAAAATTGTCCTTCAATAAGCTTCCCTCCGCCATTAAGCTTCGCATTTCTTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACCTCCGCCATTTCCCCTCTTTCCATTTTTCTCTCCAATCCATCGCCAAATCGCGGCGGCGGCGGCCGATTGTGCTCTGCAGTTCAGGAGGTTAGTTTAGAGGAAGCTACCGAGGAAAATCAGGATGTGAACCAGAAGAAAAAGTTGTACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTCGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTTGCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTGAGAAATTCAACTCTCAAGAAATATCAGGAAGAGTTATACAGGTAGAGTTTGCAAAGAGACTGAAGAAACCTCCTCCTCCAAGGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAATTCTTTTCTGAAAGCTTTAATCCAATTGCAGCCAGGGTTGTGTTTGATAGCCCCTCTGGAAGATCTGCTGGATATGGCTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCTTTGGAGGGGAAGGAATTAATGGGAAGACCACTCCGCCTGAAATTCAGTGAAAGAAATGTCAATGAATCAGAAACCCCAAAACAAGACATTGTTGAAAGCCAAACAGAAGAATCATAG 891 43.66 MATLESAIPIISQYTSSSSPSPSSSSFFSKLSFNKLPSAIKLRISFSSPLLSLNPTSAISPLSIFLSNPSPNRGGGGRLCSAVQEVSLEEATEENQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVADVEIIKQKNGRSRGFAFVTMASPDEAQAAIEKFNSQEISGRVIQVEFAKRLKKPPPPRPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKQDIVESQTEES 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26127964 26132153 + Tan0010832.1 Tan01g2201 739625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2201 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723(InterPro)
Tan01g2201 296 PANTHER OS02G0815200 PROTEIN 36 274 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Tan01g2201 296 SMART rrm1_1 199 272 IPR000504 GO:0003723(InterPro)
Tan01g2201 296 SMART rrm1_1 103 175 IPR000504 GO:0003723(InterPro)
Tan01g2201 296 SUPERFAMILY RNA-binding domain, RBD 183 279 IPR035979 GO:0003676(InterPro)
Tan01g2201 296 CDD RRM_SF 104 175 - -
Tan01g2201 296 Gene3D - 80 181 IPR012677 -
Tan01g2201 296 Gene3D - 182 286 IPR012677 -
Tan01g2201 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723(InterPro)
Tan01g2201 296 MobiDBLite consensus disorder prediction 275 296 - -
Tan01g2201 296 Pfam RNA recognition motif 200 270 IPR000504 GO:0003723(InterPro)
Tan01g2201 296 Pfam RNA recognition motif 104 172 IPR000504 GO:0003723(InterPro)
Tan01g2201 296 SUPERFAMILY RNA-binding domain, RBD 95 187 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2201 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2201 Tan-Chr1:26127964 Tan08g1613 Tan-Chr8:65558019 2.80E-32 dispersed
Tan01g2201 Tan-Chr1:26127964 Tan06g0536 Tan-Chr6:4159595 1.40E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29