Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2206 ATGGGGAAGAAGAAAACTAACAACCCCATAAATCCCCCCGACGAAATCGAAACTGGTTCTGCTCCGTCCAGCGTTTTCGATACTCTGTTCGGCAACGTCGGAGTAGAAAACTCCGGCGTTTCTATCTTCTCCACGGACAACCCCTTTCGTAGGAAAGATTCAAATTCCATTCCTGCGGCTGCAGCTGCTGAAAAATCTTCCAATGGTGGCTCTGATGATCATAATATCGATGATGTAAAGAGTAGGAAGAAGGGCAAGGAGAAAAGGGTTGGAACTGATTTGGATTCTGCTGAGGAAGGTGTCAAAAGTTCGTCGGAGATCAAGAAATCGAAGAAGAAGGAGAAGTCTCGGGACCGGGAATTGAATAATGGTCCTGTCGAGAAGGATGATGGAGAAAGCGGTTTCGAATCGCGAAGCGTATTGAAGAAGAACAAAAAGAAAGGTGATGTTTCGGGCTCTGAAACTTTAGAAATGAGTTCTGAATTTAGCGGAAAATTGAAGATAGACGAGCAAAGGAGTGACAATAAACTCGGTGAGAATGTGAAATTGATGAAAGAGAGGAAGAAGAGGAAGAGAGATGAACTTGAGAGAGAGTACGAAGCGAAAAAGTATGGTGCATCAGAGGTAGCTGATGATGGAGAAGAAGGTTCATGGGGCATTGTTGTTGGGAAGAAGAGGAAAGCATTGGACGATCCTTCAGAGATGTTGGTAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTCTGAGAACTGTGTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAAACTTTAGGCAAGGAGTTTAGCCAATTTGGAGAGATAGAATCTGTTAGGATCCGGTCTGTGCCACTTGCAAATAGCAAAAAACCGAGGAAAGGGGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGTGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGTGTTGATAGGGCATGCCCTCCGCGTAAAAAGTTGAAAGTAGGAAGTGCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAATTATTTTGCGGAATCGAGAACGTGGGATCCAGTGTTGAAGCTGTTCGGGTCATCAGAGACCCTAATGTGAACATAGGGAAGGGCTTTGCATATGTCTTCTTTAAAACAAGGGAAGCAGCAAATTCCGTAGTTAACAAACAAAAACTAGAGTTGCGTGATAGAACGCTGAGGCTCTTTCATGCCAAACCAAATCTGGCATCGACCCCACTCAAGAAACGGAATAAACCATCTACCGAAGCCGATCACTCCCCAGCAAAGAAAAGGGCAGTGGATTCAGGTTTGAGGACACCAGACAGCAGCAAGAGGGTAACGCCGAAAGCTCCTGTTGCATCCTATCAGGGCCTGCGTGCGAGCAAAACTGGCTCCCAGAAGAAGATCCATGCTAAAGGCAATAGCACGAAATGGCCGAAATCATATTCAAACAGTAAGGAGAAGCCAGTAGATCACAAGAGGAAAAGACCAGAGAAGACAAGTGAAAGGAAGGGGAAAAGACCAGCAGTTGCCAACAGAAAGGCTGTGGCAAAAGCGTCGAAAAATGGCGTTGCAGCAGCGCCAAAACAAGTCGGGGTGAAGCGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAGAGAATCAAAAGGTTAAGATAG 1776 44.76 MGKKKTNNPINPPDEIETGSAPSSVFDTLFGNVGVENSGVSIFSTDNPFRRKDSNSIPAAAAAEKSSNGGSDDHNIDDVKSRKKGKEKRVGTDLDSAEEGVKSSSEIKKSKKKEKSRDRELNNGPVEKDDGESGFESRSVLKKNKKKGDVSGSETLEMSSEFSGKLKIDEQRSDNKLGENVKLMKERKKRKRDELEREYEAKKYGASEVADDGEEGSWGIVVGKKRKALDDPSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKTLGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTVESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSAPIYDPKRTVFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTREAANSVVNKQKLELRDRTLRLFHAKPNLASTPLKKRNKPSTEADHSPAKKRAVDSGLRTPDSSKRVTPKAPVASYQGLRASKTGSQKKIHAKGNSTKWPKSYSNSKEKPVDHKRKRPEKTSERKGKRPAVANRKAVAKASKNGVAAAPKQVGVKRKSDSRTPESSHRNKRIKRLR 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26157000 26160947 + Tan0013954.1 Tan01g2206 739630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2206 591 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 359 532 - GO:0005730(PANTHER)
Tan01g2206 591 MobiDBLite consensus disorder prediction 520 545 - -
Tan01g2206 591 Coils Coil 178 205 - -
Tan01g2206 591 MobiDBLite consensus disorder prediction 453 474 - -
Tan01g2206 591 SUPERFAMILY RNA-binding domain, RBD 355 451 IPR035979 GO:0003676(InterPro)
Tan01g2206 591 MobiDBLite consensus disorder prediction 70 152 - -
Tan01g2206 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 361 442 IPR000504 GO:0003723(InterPro)
Tan01g2206 591 MobiDBLite consensus disorder prediction 38 199 - -
Tan01g2206 591 Pfam RNA recognition motif 252 289 IPR000504 GO:0003723(InterPro)
Tan01g2206 591 Pfam RNA recognition motif 363 436 IPR000504 GO:0003723(InterPro)
Tan01g2206 591 SMART rrm1_1 362 438 IPR000504 GO:0003723(InterPro)
Tan01g2206 591 SMART rrm1_1 251 340 IPR000504 GO:0003723(InterPro)
Tan01g2206 591 MobiDBLite consensus disorder prediction 38 52 - -
Tan01g2206 591 CDD RRM1_RBM34 250 340 - -
Tan01g2206 591 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 344 IPR000504 GO:0003723(InterPro)
Tan01g2206 591 MobiDBLite consensus disorder prediction 494 519 - -
Tan01g2206 591 Gene3D - 356 447 IPR012677 -
Tan01g2206 591 Gene3D - 247 349 IPR012677 -
Tan01g2206 591 SUPERFAMILY RNA-binding domain, RBD 245 351 IPR035979 GO:0003676(InterPro)
Tan01g2206 591 MobiDBLite consensus disorder prediction 163 199 - -
Tan01g2206 591 MobiDBLite consensus disorder prediction 439 591 - -
Tan01g2206 591 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2206 K14837 - - csv:101206555 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2206 Tan-Chr1:26157000 Tan10g0066 Tan-Chr10:998097 1.40E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31