Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2212 ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCGTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAGGATCCCACGCAAGCCGTTGCCTCGGGTATTTTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAACACCTTAGGAACGCCGAAGGATACCCCCGAGCTACGCGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCAAGCGAAATAGATCATCATGCTGAAGTTAATGCGAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACGGCATATACACCTTTTGTTCCTCAGGCTGTTTTACCTTCTAGCTACACAGCCGGTGAGTCAGATGCAAGCTCAGAAAAGAATCTTGAACAGCGTGCCCTCCTTATGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATAGCATTCAATGAGGCAATAATTGAGGAAAGAGAACAAGGTATTCATGAAATCCAGCAGCAAATCGGAGAAGTGAATGAAATTTTTAAAGATCTCGCGGTTCTAGTCCACGAACAGGGAGCCATGATTGATGATATTGGATCGAACATAGAGAGTTCCCATGCTGCAACGTCACAGGGAACGGCTCAGCTTGTAAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTTCTCATTGTGATCATAATAGTTGTTGCTTAA 825 43.76 MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGESDASSEKNLEQRALLMESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIESSHAATSQGTAQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26239413 26245652 - Tan0011779.1 Tan01g2212 739636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2212 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Tan01g2212 274 Gene3D - 175 274 - -
Tan01g2212 274 CDD SynN 24 158 IPR006011 GO:0016020(InterPro)
Tan01g2212 274 PANTHER SYNTAXIN 36 264 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan01g2212 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan01g2212 274 Gene3D - 21 134 - -
Tan01g2212 274 SMART SynN_4 16 128 IPR006011 GO:0016020(InterPro)
Tan01g2212 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan01g2212 274 CDD SNARE_Qa 184 242 - -
Tan01g2212 274 Pfam SNARE domain 218 269 IPR000727 -
Tan01g2212 274 FunFam Syntaxin-22 like 21 134 - -
Tan01g2212 274 SMART tSNARE_6 176 243 IPR000727 -
Tan01g2212 274 Pfam Syntaxin-like protein 30 130 IPR006011 GO:0016020(InterPro)
Tan01g2212 274 FunFam Syntaxin-22 like 174 274 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2212 - - - 0.0