Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g2266 | ATGGCAGCGTCGATGGCGCCGTTTAAGCTGACGGAAGGAGGAGTGATGGTGATATGCAAGAGGGAATCGACGGCAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACCCATTACCAGCAAGGGATGTTGGGCACTCAGCTGAATGGATTGGTGAAGTCCGGGAAGCTGCAGAAAGGTTCCATCGTTCAACTAAAGCAATATATTTGTAACCCTGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGGTACTGGAAATGTGTGAATTTATTGGCGAGCCTGTACCAGCAACGAGATCGGTAACAGGTGCATTTAGTGGAAACCCGCAATCCTCTATGGGGACTTCACCCAGCAGTGGAATAGTTGGTAAGGTAAATGTAACTAGTGCATCTTTTGAACAGCCTAACGTGAATCAATCACATGCACCGCATGTGGGAGCTTATTCTAACACTTCTGAATCTGGAAGATACGCTGCGTCAATTGCACCTCCTCATCACCCTAAGACAGAACCTGGAACAAGGTTTAACGGGTCATCTTCTATAAGTGGGTCATATGGTGATCAGAAGATGGCATATCACAACAATGGATCAGATATTCCAAGGCCACCTCTAAATGCTTACACCCGTCCTCAGCCAACATATCAGCAGCCACCTCCCACGTACAGTAACAGGGGACCAGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGCGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAACACAGTAGCCGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTACATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTCAACCATCTCAAAAATGACTATGAAATATTGCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAGCAACAGTTTCATTTCCATCAGATTAATGAGATTGAAGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTACCTCCATTAATCCTGCAACTTCTCTAATGAGAAAAAATGGCATTGAGATTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGCCCGAAGTGTTGAATTGACTCTGTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACAATTTCTACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACACTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTATATCCAGGGAAGTTTCTAGCGTGGGCAGAACAGATCTCCGTAAGACCATATCTCAAATAAAAGATGAGAAGCTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTACTGCAACTGTTTCATTTATTAAGGTTGACAACTTCTGTTACACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTTGATGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGACCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAGGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTATATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATAATCCGTAAGGTTCTTTTCACAAAATTTATTATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCATCCGAGTCCCGGTTTCTTCTAGATCTGATGGAAAAGCTCAGGGCAGAGAACACTAGTTCTATTACCCCAAAGACAGAAAGCACCATACATAATCCCGGACTTCACAACCCTGGAGCTGGGAATGTTGCTGGTGGACAGTTTGTGTCACCCCTTCGAAATAGTAGCAGCAATGTTAGTAGAGAATATGGTACACCAAGTCAAGGTGTTCAGTATGGGAACCAGTACAACAGTTCTAGGCCTTCTCCATCTACACCGCTTAACTCGCACACGTACTGCAACAGCTGTGGAGGCTCTGGTCACAGCTCAATGAACTGCCCGAGTATCATGAGCGGTCCTGCGCTTCCCGTTGGTGGCAGGATGTATTCCAATCGATCTTCTGGCCCTTCTGGTGGTGCCTCTGAGGAATGCTTCAAATGCCATCAAACTGGGCACTGGGCTAGGGATTGCCCTGGTTTGAGCACTGTCCCTCCAGCTTATGGTAACAGTGGCTTCACTGCTAGGTGA | 2574 | 44.48 | MAASMAPFKLTEGGVMVICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYICNPVQERLIIIVIELDVVLEMCEFIGEPVPATRSVTGAFSGNPQSSMGTSPSSGIVGKVNVTSASFEQPNVNQSHAPHVGAYSNTSESGRYAASIAPPHHPKTEPGTRFNGSSSISGSYGDQKMAYHNNGSDIPRPPLNAYTRPQPTYQQPPPTYSNRGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYYISKGSLKPAQKNFNHLKNDYEILLESTSTIQPCFEDDQSIPQQQFHFHQINEIEGMDSNSVVDVIGVVTSINPATSLMRKNGIEIQKRTLQLKDMSARSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSISREVSSVGRTDLRKTISQIKDEKLGTSEKPDWITVTATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRFLLDLMEKLRAENTSSITPKTESTIHNPGLHNPGAGNVAGGQFVSPLRNSSSNVSREYGTPSQGVQYGNQYNSSRPSPSTPLNSHTYCNSCGGSGHSSMNCPSIMSGPALPVGGRMYSNRSSGPSGGASEECFKCHQTGHWARDCPGLSTVPPAYGNSGFTAR | 857 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 26968061 | 26972541 | - | Tan0000893.1 | Tan01g2266 | 739690 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g2266 | 857 | FunFam | Replication protein A subunit | 9 | 123 | - | - | |
| Tan01g2266 | 857 | FunFam | Replication protein A subunit | 512 | 703 | - | - | |
| Tan01g2266 | 857 | ProSiteProfiles | Zinc finger CCHC-type profile. | 782 | 797 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2266 | 857 | Gene3D | - | 260 | 369 | IPR012340 | - | |
| Tan01g2266 | 857 | SUPERFAMILY | Retrovirus zinc finger-like domains | 811 | 844 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2266 | 857 | CDD | RPA1_DBD_B | 395 | 502 | - | - | |
| Tan01g2266 | 857 | MobiDBLite | consensus disorder prediction | 160 | 257 | - | - | |
| Tan01g2266 | 857 | MobiDBLite | consensus disorder prediction | 197 | 216 | - | - | |
| Tan01g2266 | 857 | Gene3D | - | 8 | 123 | IPR012340 | - | |
| Tan01g2266 | 857 | MobiDBLite | consensus disorder prediction | 160 | 182 | - | - | |
| Tan01g2266 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
| Tan01g2266 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 526 | 703 | IPR012340 | - | |
| Tan01g2266 | 857 | ProSiteProfiles | Zinc finger CCHC-type profile. | 826 | 840 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2266 | 857 | Pfam | Zinc knuckle | 825 | 840 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2266 | 857 | Pfam | Replication protein A OB domain | 384 | 487 | IPR031657 | - | |
| Tan01g2266 | 857 | NCBIfam | replication factor-a protein 1 (rpa1) | 238 | 702 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Tan01g2266 | 857 | CDD | RPA1_DBD_A | 263 | 366 | - | - | |
| Tan01g2266 | 857 | SMART | c2hcfinal6 | 825 | 841 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2266 | 857 | SMART | c2hcfinal6 | 781 | 797 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Tan01g2266 | 857 | FunFam | Replication protein A subunit | 260 | 370 | - | - | |
| Tan01g2266 | 857 | CDD | RPA1_DBD_C | 529 | 702 | IPR047192 | - | |
| Tan01g2266 | 857 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 263 | 683 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Tan01g2266 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 379 | 507 | IPR012340 | - | |
| Tan01g2266 | 857 | Gene3D | - | 778 | 844 | - | - | |
| Tan01g2266 | 857 | CDD | RPA1N | 13 | 109 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Tan01g2266 | 857 | Gene3D | - | 373 | 510 | IPR012340 | - | |
| Tan01g2266 | 857 | MobiDBLite | consensus disorder prediction | 743 | 776 | - | - | |
| Tan01g2266 | 857 | FunFam | Replication protein A subunit | 373 | 511 | - | - | |
| Tan01g2266 | 857 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Tan01g2266 | 857 | Gene3D | - | 511 | 703 | IPR012340 | - | |
| Tan01g2266 | 857 | Pfam | Replication factor-A C terminal domain | 545 | 696 | IPR013955 | - | |
| Tan01g2266 | 857 | Pfam | OB-fold nucleic acid binding domain | 274 | 359 | IPR004365 | GO:0003676(InterPro) | |
| Tan01g2266 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 260 | 373 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g2266 | Tan-Chr1:26968061 | Tan08g0026 | Tan-Chr8:464589 | 1.60E-200 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g2266 | K07466 | - | csv:101211358 | 1509.97 |