Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2305 ATGGCTTCCTTTTCTACTTCTCTTCTTCCTCTCTTCCTCTTCTTCCCTTTCTTCTCAGGTGTAAATTCAGCGACTTTCACCATTTTAAACCAGTGTGGTTACACAGTTTGGCCGGGAATTTTGTCCGGCGCCGGCACATCACAGCTCTCCACCACCGGCTTCGTCCTGCAGCCAGGGGAGTCCAACGCCCTCACTATGCCGCCATCGTGGTCCGGCCGCATTTGGGGCCGCACATATTGCTCCCAAGACGCCGCCGGCAGATTCTCCTGCGCCACCGCCGACTGCGGCTCTGGTACTGTCGAATGCAATGGCGCCGGTGCGGCCCCACCCGCCACCCTCGCCGAGTTCACGCTGAACGGTGCCGGCGGCCTTGATTTTTACGATGTCAGCCTTGTGGATGGCTACAATGTTCCCATGTTAATCACCCCGCAGGGCGGAACAGGTGGGGGGAATTGCAGGACGATCGGGTGTGCGACAGATATAAACAGCGAGTGCCCAGCAGAGCTAAGAGTGGCGGCGAGTGAGGGGAGCGTGGCGTGTAAGAGCGCGTGTGGGGCATTTGGGGAGGCGCAGTATTGTTGCAGTGGGGAATATGGGAACCCAAACAGTTGCCGGCCGACATCGTACTCAGAATTCTTCAAGTCGGCATGTCCACAAGCTTATAGTTATGCCTATGATGATGGAAGTAGCACCTTCACTTGCCCCGCCGCCAATTATCTCATCACTTTTTGTCCTTCTCTTTCAACCAGTGTGAAATCATCTAACGGGCGGTACCCGCGGGCAGTGGACGTCTCAAGAGCCGGGCATTCGGGCAGGCCGTTAACGTCAGTAGTCGTTATCTCCACCATTACGGCAGCTCTAAGTCGGCGATTTTTACGGCTCTTTTAA 888 55.97 MASFSTSLLPLFLFFPFFSGVNSATFTILNQCGYTVWPGILSGAGTSQLSTTGFVLQPGESNALTMPPSWSGRIWGRTYCSQDAAGRFSCATADCGSGTVECNGAGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQGGTGGGNCRTIGCATDINSECPAELRVAASEGSVACKSACGAFGEAQYCCSGEYGNPNSCRPTSYSEFFKSACPQAYSYAYDDGSSTFTCPAANYLITFCPSLSTSVKSSNGRYPRAVDVSRAGHSGRPLTSVVVISTITAALSRRFLRLF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27719526 27723913 + Tan0017919.1 Tan01g2305 739729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2305 295 Pfam Thaumatin family 30 245 IPR001938 -
Tan01g2305 295 PIRSF PR5 1 288 IPR001938 -
Tan01g2305 295 SMART tha2 26 245 IPR001938 -
Tan01g2305 295 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Tan01g2305 295 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Tan01g2305 295 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Tan01g2305 295 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Tan01g2305 295 PANTHER OS03G0233200 PROTEIN 13 245 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Tan01g2305 295 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Tan01g2305 295 ProSiteProfiles Thaumatin family profile. 23 245 IPR001938 -
Tan01g2305 295 CDD TLP-PA 25 244 - -
Tan01g2305 295 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Tan01g2305 295 FunFam THAUMATIN-LIKE PROTEIN 1 24 245 - -
Tan01g2305 295 Gene3D Thaumatin 24 245 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2305 Tan-Chr1:27719526 Tan01g5033 Tan-Chr1:115914840 8.00E-88 dispersed
Tan01g2305 Tan-Chr1:27719526 Tan01g2306 Tan-Chr1:27778140 4.70E-80 tandem
Tan06g0546 Tan-Chr6:4233076 Tan01g2305 Tan-Chr1:27719526 1.30E-72 transposed
Tan01g2305 Tan-Chr1:27719526 Tan03g2089 Tan-Chr3:75777090 3.40E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2305 - - - 0.0