Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2315 ATGGCAGAAGAGGATACCCCCTCTGAAAGTTCTGAATCTTCTTCTTCTTCTTCAGCTCTCACCTCTCCAATGTCAACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTCTGAGAAGAAACACAGTCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTTATGCTAGCTATTTTGATTGGGCTGCTGACAATTCTCACATGGCATTTCACAAAGAGCTACACAGCGCAGTCACTGGACAGTTTAGCCTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTGCTAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGATGTTACGTGGGCGTTGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTTCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCAGATCTTGCAAACTATTCCATTAGTGCCACTGAATCGTATAATATCAATCGGCTTTCATCGGGTGAAGGATGGTCGGAGCCACCCATACATGGCAATGTTTCTGCAAAATGGTACAGGGAACCACTTGATCCTACTACCGGCGAGAAGATCGGGAAAGCAAGGCAAATCCCACCAGAGGATTTAATTAATATTGCTGGCATTTCCCAAGTGGCAGATGGTGTTGCCTCCTGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCGGCAGCCCTGCCTGTTTCTGATGCTTCGAATGAAAGCATAGTTGCAGTAGTGGGCGTTACAACCGCACTTTATAGTGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTTCAAAGCTTATGATGGCTGTCGATTCCCAGGATGATGTGATTCGATTAGGAGCAGAGTGGTTACAGAAAACCTATGGAAATAATTTTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGATCAACAATATTACATTGACTCATTTTTTCTTAATCTAAAAAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGCCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAAGAAATGAAACTCAGAGCCGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGGACGCCGATGGCAGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCGACGGTTACTCAGATCAGAAAATGCTCAACAGCTCTACTTCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGACCTGGGTCGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCTAGATTAGTACGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACTAATTTGATCAGTAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGATGTCAAATACACTCAATGAAATGGGCAAGTTTTGTATTGATCAGAAGAAATCGCGATTTCCTAATCGGACAAAGATGAAACAGGGAGACCACCCAAAGAATGCCTGCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACAACTCGCACGCATGGTGGCACGGGTCTTGGACTATGCATCGTACGTACCTTGGTCAACAAGATGGGTGGAGAAATCAAGGTTATAAAAAAGAACGGCCCGGGAACATTAATGCGACTTTACTTGGTTCTTAGCACGCCAGTAGATTCGACGGATCATCACTGTCAGCTTGATTTCGCAAAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAAAATCGGACTGCTCACTTTAGAAGCTTCAGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGCTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGAGAACTATTACGAGCAGAATTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATTGTTGCCGATATCGGGATACTAGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGCAAAATTTGCATGGATGTTAAACCACGATACGCCCAACGCCATTAAGATGGAGCTTCGAGGAAAAGGACACATTATAATGAACAATAAGCCACTGTACAAAGCAAAAATGATTCATATTTTGGAAACTGTTATGAAGGACAGAAACCTTGAGTTGCAGAAGAAAAATGCTTTAAGAACTGCATCAAAGGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGCAATTCCAACTCTCAGTGTGCAATGTTTCAAGTCAAAGACGATCAAGAAGAAACGATTGTGAAACCGTGTCAGTCACCATTTCCGCCCGCTAACAATAGCTTAGTTGAGTTAACTCATGTACATTCGAACGAGAGTAATGTGAGGAATGGCGATCTGTGTGACACAAGGCAAACCTCATCAAAGCCTCAATGCCAAAGTTCTGAATCCAATGGACAGAACTTGGTATTGAACTGTCCTACAAGCCAAGGAGAATCACATTCTAAGAACGTGCATGGCAAGAAATCTCTTGAAGGGGTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACGATAATGCTTGAAAAGATGGGAGCAACGGTCATTGCTGTTGGAGATGGACTGCAGGCTGTAGAAGCTCTGACTGTCATGCTTAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATATTAATGGATTGCCAAGTAAGTACCAAATTACAGTTACCCTCCATGAGCCAAAATTGA 3495 42.23 MAEEDTPSESSESSSSSSALTSPMSTPLRKVFCRISGLATSLRRNTVPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMRKYSKPANQAEQVELYEAMRDVTWALFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPTTGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGSKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCEMSNTLNEMGKFCIDQKKSRFPNRTKMKQGDHPKNACKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVIKKNGPGTLMRLYLVLSTPVDSTDHHCQLDFAKHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGELLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTPNAIKMELRGKGHIIMNNKPLYKAKMIHILETVMKDRNLELQKKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNSNSQCAMFQVKDDQEETIVKPCQSPFPPANNSLVELTHVHSNESNVRNGDLCDTRQTSSKPQCQSSESNGQNLVLNCPTSQGESHSKNVHGKKSLEGVRILLAEDTPVLQRVTTIMLEKMGATVIAVGDGLQAVEALTVMLSAEEQRRECPTRYDLILMDCQVSTKLQLPSMSQN 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27902842 27908609 + Tan0017064.2 Tan01g2315 739739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2315 1164 Gene3D - 494 573 - -
Tan01g2315 1164 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 766 IPR036890 -
Tan01g2315 1164 SUPERFAMILY CheY-like 1084 1152 IPR011006 -
Tan01g2315 1164 ProSiteProfiles Response regulatory domain profile. 1088 1164 IPR001789 GO:0000160(InterPro)
Tan01g2315 1164 MobiDBLite consensus disorder prediction 7 23 - -
Tan01g2315 1164 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2315 1164 SMART HKATPase_4 619 770 IPR003594 -
Tan01g2315 1164 PRINTS Bacterial sensor protein C-terminal signature 713 723 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g2315 1164 PRINTS Bacterial sensor protein C-terminal signature 695 709 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g2315 1164 PRINTS Bacterial sensor protein C-terminal signature 730 748 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Tan01g2315 1164 Gene3D - 1068 1162 - -
Tan01g2315 1164 MobiDBLite consensus disorder prediction 1033 1062 - -
Tan01g2315 1164 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2315 1164 ProSiteProfiles Histidine kinase domain profile. 513 770 IPR005467 -
Tan01g2315 1164 SMART HisKA_10 506 572 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2315 1164 PANTHER TWO-COMPONENT HISTIDINE KINASE 47 777 IPR050736 -
Tan01g2315 1164 FunFam Histidine kinase 1-like protein 494 573 - -
Tan01g2315 1164 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 767 IPR003594 -
Tan01g2315 1164 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g2315 1164 CDD HisKA 507 568 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Tan01g2315 1164 Gene3D - 574 771 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2315 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2315 Tan-Chr1:27902842 Tan08g0665 Tan-Chr8:6613239 1.10E-52 dispersed
Tan01g2314 Tan-Chr1:27902842 Tan01g2315 Tan-Chr1:27902842 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g2314 . 28 1219 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1464.5
Tan01g2315 . 28 1152 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1345.1
Tan11g1724 . 23 986 Histidine Kinase Gene Family AT2G01830 73.0 0.0e+00 1339.3
Tan04g1702 . 20 1003 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1338.9
Tan06g1521 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan06g1522 . 58 1000 Histidine Kinase Gene Family AT2G01830 54.1 1.3e-278 956.8
Tan02g0457 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan02g0458 . 281 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.8e-276 949.1
Tan05g0968 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0969 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan05g0970 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.5 3.5e-271 932.2
Tan01g3520 . 1 998 Histidine Kinase Gene Family AT5G10720 58.3 6.8e-295 1010.7
Tan01g3521 . 1 961 Histidine Kinase Gene Family AT5G10720 57.5 1.0e-274 943.7
Tan01g2789 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.1 0.0e+00 1852.0
Tan01g2783 . 1 1134 Histidine Kinase Gene Family AT1G09570 72.0 0.0e+00 1645.9
Tan02g0487 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan02g0490 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.4 0.0e+00 1231.9
Tan10g1077 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.3
Tan02g0489 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0488 . 18 1001 Histidine Kinase Gene Family AT1G09570 55.9 0.0e+00 1116.3
Tan02g0491 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0492 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan02g0493 . 18 952 Histidine Kinase Gene Family AT1G09570 57.5 0.0e+00 1100.5
Tan10g1077 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1665.6
Tan05g2567 . 31 1042 Histidine Kinase Gene Family AT2G18790 61.5 0.0e+00 1263.8
Tan01g2789 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1090.9
Tan02g0487 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan02g0490 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Tan01g2783 . 20 1071 Histidine Kinase Gene Family AT2G18790 51.5 1.9e-310 1062.8
Tan02g0489 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0488 . 26 993 Histidine Kinase Gene Family AT2G18790 54.4 1.8e-305 1046.2
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT2G18790 55.9 4.6e-301 1031.6
Tan02g0487 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0490 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.5 0.0e+00 1397.5
Tan02g0489 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0488 . 12 994 Histidine Kinase Gene Family AT5G35840 63.0 0.0e+00 1266.9
Tan02g0491 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0492 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan02g0493 . 12 955 Histidine Kinase Gene Family AT5G35840 64.1 0.0e+00 1243.0
Tan10g1077 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.6 0.0e+00 1147.5
Tan01g2789 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Tan10g1077 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1708.0
Tan05g2567 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.1 0.0e+00 1303.9
Tan01g2789 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.7 0.0e+00 1138.3
Tan02g0487 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0490 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.1 0.0e+00 1122.8
Tan02g0489 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0488 . 26 982 Histidine Kinase Gene Family AT4G16250 53.9 8.9e-300 1027.3
Tan02g0491 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0492 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan02g0493 . 26 952 Histidine Kinase Gene Family AT4G16250 54.8 1.7e-295 1013.1
Tan05g2567 . 15 1114 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1385.5
Tan10g1077 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1275.0
Tan02g0491 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0492 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
Tan02g0493 . 27 952 Histidine Kinase Gene Family AT4G18130 50.4 8.6e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38