Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2340 ATGTTATCAAGTTTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATCGTCGGTCACGTCGGGGCGGTGGTTCCGATTCAGTTGGCTGCCAAGATGGGCTACTTTGGTACAAAGACCACGGCCAACACATCAATGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTGAGCTTGCTTGAGTCTGGACCCCATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCTGAGACGTCGCGGTTCATATGTGGTAACTTGTTCCAGCACCTCAAAGTGTTTGCCACAGAAGAAAAGGAAATGTCAGCAAATGTGATAAAGAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTATTGTCACTAAGCAATGGCCTTTGAACCCCCAGATTGCAGCTGTTGGGTCTTGCTGTCTGGTTGGTGTGATTTGTAATGGGAAACTCTACATTGCCAACCTCGGCGATTCCCGAGCCGTGTTGGGAAGGCTCATCCGGTCCACCGGGGAAGTTCTTCCCATTCAGCTATCATCAGAGCACAATGCAAGCATACAATCTGTCCGCCAGGAGATGCAGTCTTTGCATCCTGATGACCCCCAGATAGTAGTCTTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATTGGAGATGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTCTGAGCTCAGAACCAGCAATATCTGTGCACGAACTTGATCCAAACGATCAATTCCTGATATTTGCTTCTGATGGGCTGTGGGAGCACCTTAGCAATCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGTAAGTTGTGTTTCTTTTCAAGTGTAA 957 47.86 MLSSLMNFLRACWQPCADRRSRRGGGSDSVGCQDGLLWYKDHGQHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPHGTFVGIYDGHGGPETSRFICGNLFQHLKVFATEEKEMSANVIKKAFQATEEGFLSIVTKQWPLNPQIAAVGSCCLVGVICNGKLYIANLGDSRAVLGRLIRSTGEVLPIQLSSEHNASIQSVRQEMQSLHPDDPQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAISVHELDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSVSCVSFQV 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28243762 28247732 + Tan0001560.2 Tan01g2340 739764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2340 318 CDD PP2Cc 50 312 IPR001932 -
Tan01g2340 318 Pfam Protein phosphatase 2C 77 309 IPR001932 -
Tan01g2340 318 FunFam Phosphatase 2C family protein 38 315 - -
Tan01g2340 318 SUPERFAMILY PP2C-like 75 307 IPR036457 -
Tan01g2340 318 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Tan01g2340 318 SMART PP2C_4 43 314 IPR001932 -
Tan01g2340 318 Gene3D - 39 315 IPR036457 -
Tan01g2340 318 PANTHER PROTEIN PHOSPHATASE 42 309 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g2340 318 ProSiteProfiles PPM-type phosphatase domain profile. 49 318 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2338 Tan-Chr1:28243199 Tan01g2340 Tan-Chr1:28243762 1.20E-182 dispersed
Tan01g2340 Tan-Chr1:28243762 Tan03g2123 Tan-Chr3:76028766 1.80E-141 dispersed
Tan01g2339 Tan-Chr1:28243762 Tan01g2340 Tan-Chr1:28243762 1.20E-182 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2340 K01102 - csv:101220137 587.8