Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan01g2341 | ATGGATTTCATAGCCAACCCATTTCGCTTTTCTTCTTCCTCCTCGCCTTCGTTTGGGAATCTCTTTGAGAGAGGTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTATCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGTGCAATTTCTGGAGCTGTTTTTTCAATTGAAGTCTTTGAATCATCTTTGGTTCTTTGGCAATCAGATGAATCGGGGATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGATTAGTTCGAGAACGGATCGGTCCGGCCATATTGAGTGCAGTTCAAAGTCAGATGGGTGCTTCAGAGACAAGCTTTGATGACATCTCAAACATCTTTGACACTGGCAGCGCGAAAGGATTGCCCGGGGACTCGGTTGAGAAAATTCCCAAGATCGTAGTATCTAAGAACAACAGTGTGGATGCTTATGGAGAGAAAGTCTGCTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAGTGGCTTCTTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 708 | 45.2 | MDFIANPFRFSSSSSPSFGNLFERGREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGASETSFDDISNIFDTGSAKGLPGDSVEKIPKIVVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 28250012 | 28252024 | - | Tan0001857.1 | Tan01g2341 | 739765 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan01g2341 | 235 | FunFam | NEP1-interacting protein-like 1 | 150 | 235 | - | - | |
| Tan01g2341 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Tan01g2341 | 235 | Pfam | YMGG-like Gly-zipper | 50 | 85 | IPR027367 | - | |
| Tan01g2341 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 21 | 234 | IPR044523 | - | |
| Tan01g2341 | 235 | CDD | RING-H2_NIPL1-like | 189 | 232 | - | - | |
| Tan01g2341 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Tan01g2341 | 235 | SUPERFAMILY | RING/U-box | 177 | 235 | - | - | |
| Tan01g2341 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Tan01g2341 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan01g2341 | Tan-Chr1:28250012 | Tan11g0738 | Tan-Chr11:6294827 | 3.60E-14 | dispersed | |
| Tan01g2341 | Tan-Chr1:28250012 | Tan10g0469 | Tan-Chr10:3847485 | 7.20E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan01g2341 | - | - | - | 0.0 |