Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2353 ATGCCGATTGAGGATGATGTTGTTGAGAGTTGCGGTAGCAGAGCCACGAACTCCTCCTCCTCCCATGCCAACCCCAGGCATCATCGCCAGAAGCTCGAGGTTTACACCCAAGTGCTTCATCGGATTCAGGAATCCAATTTACATGAGGCGAATCTACCTGGGTTTGATGATCAGCTTTGGCTCCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCGGAAGATGTACTCACACATCAGAGATTACTTCAATTGGCTGTAGACCCTGCTAACCGACCTGCATTTGAAGTTCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGCTCTTTTAATTATTCTAACAGACAGGGGAACTATCCACCTCCAACCTTTGGTTCTTCACCTAGTCTTGAAGCACTTGCACTTCAGGCCAGCAAGTATGGTGTTGAAGATAGGGATAGTGCCCTAAATGTGACACCTTGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTATCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTATGAGGAAACTGAGGAGCTTAAAAGGGCATTAGAAAAAGAAATTTTAAATTTTAAGAAGCAGTGTTGGTCAGAAAAGCAGTCCAGTCCTGGTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGCAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATATGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAAGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTCCAATTCATTGGTGCTTGTACTAAACCTCCAAACCTTTGCATCGTGACAGAGTTTATGTCGAGAGGAAGTATATATGACTTCCTTCATAAGCAAAGAGGTTCATTTAACCTTCTGTCTTTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAATTATTTGCATCAAAATAATATAATCCACCGAGACCTTAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTTAAGGTTGCTGATTTTGGAGTTGCAAGAGTTCAAGCTCAATCTGGAGTGATGACAGCTGAAACTGGAACATACCGATGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGATGTTTTCAGTTTTGGAATAGCCTTGTGGGAGCTTTTAACTGGAGAAATTCCTTACTCTACCATGACGCCATTACAAGCAGCGGTTGGCGTGGTCCAGAAGAGACTCCGGCCAACAATACCCAAGAATACCCATCCCATTGTTGCCGAACTGCTTGAGAGATGCTGGCGACAGGATCCAACTGAACGGCCAAACTTCTCTGAAATTTTAGAGAACCTCAAGCAGATGGTTGAGCAGGTCGAAAACAATGGGGAAAATCGACGCAAGAAGGATAAATTATCTGGCGCGTTCTTCTCAGCTTTCAAGAGGGGACACCACTGA 1743 42.8 MPIEDDVVESCGSRATNSSSSHANPRHHRQKLEVYTQVLHRIQESNLHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHQRLLQLAVDPANRPAFEVRSVQVYPSANENFINSSCLDSSMMEDAQSSFNYSNRQGNYPPPTFGSSPSLEALALQASKYGVEDRDSALNVTPCFSRPMHEITFATSDKPKLLSQLTSLLSDVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRALEKEILNFKKQCWSEKQSSPGLGKHNQNRVESFPSCVEIPTDGTDVWAIDTRQLKFENKVGSGSYGDLYRGTYCSQEVAIKVLKPERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSIYDFLHKQRGSFNLLSLLKVAIDISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSTMTPLQAAVGVVQKRLRPTIPKNTHPIVAELLERCWRQDPTERPNFSEILENLKQMVEQVENNGENRRKKDKLSGAFFSAFKRGHH 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28329619 28336681 + Tan0014251.1 Tan01g2353 739777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2353 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 FunFam serine/threonine-protein kinase HT1 377 568 - -
Tan01g2353 580 MobiDBLite consensus disorder prediction 1 29 - -
Tan01g2353 580 Coils Coil 537 564 - -
Tan01g2353 580 ProSiteProfiles Protein kinase domain profile. 298 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 PRINTS Tyrosine kinase catalytic domain signature 409 427 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 PRINTS Tyrosine kinase catalytic domain signature 518 540 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 PRINTS Tyrosine kinase catalytic domain signature 372 385 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 PRINTS Tyrosine kinase catalytic domain signature 455 465 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 PRINTS Tyrosine kinase catalytic domain signature 474 496 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 Pfam Protein tyrosine and serine/threonine kinase 298 547 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 SMART serkin_6 298 551 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2353 580 SUPERFAMILY Protein kinase-like (PK-like) 273 546 IPR011009 -
Tan01g2353 580 FunFam Serine/threonine-protein kinase isoform 1 288 376 - -
Tan01g2353 580 Gene3D Transferase(Phosphotransferase) domain 1 377 573 - -
Tan01g2353 580 SUPERFAMILY ACT-like 183 248 IPR045865 -
Tan01g2353 580 ProSiteProfiles ACT domain profile. 185 260 IPR002912 -
Tan01g2353 580 Coils Coil 235 255 - -
Tan01g2353 580 ProSitePatterns Protein kinases ATP-binding region signature. 304 325 IPR017441 GO:0005524(InterPro)
Tan01g2353 580 CDD STKc_MAP3K-like 304 547 - -
Tan01g2353 580 Gene3D Phosphorylase Kinase; domain 1 288 376 - -
Tan01g2353 580 PANTHER SERINE-THREONINE PROTEIN KINASE 127 550 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2353 Tan-Chr1:28329619 Tan02g0641 Tan-Chr2:5896324 5.50E-226 dispersed
Tan05g0514 Tan-Chr5:3547143 Tan01g2353 Tan-Chr1:28329619 1.40E-38 dispersed
Tan09g0554 Tan-Chr9:49097452 Tan01g2353 Tan-Chr1:28329619 2.70E-40 dispersed
Tan11g1341 Tan-Chr11:11645114 Tan01g2353 Tan-Chr1:28329619 1.40E-27 dispersed
Tan01g2353 Tan-Chr1:28329619 Tan03g2260 Tan-Chr3:76884458 1.10E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67059 PF07714 PK_Tyr_Ser-Thr 5.90E-75 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2353 - - - 0.0