Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2370 ATGATGGAGTGGGAAAAGCCCGACCACCAAAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACTGGAACCACCGCCGGCGCTCTTTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAGATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTAGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAGATTACTTCTAGACAGCGATGGACTCCGACGCCCGTGCAACTCCAGATCTTGGAGCGTATATTTGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAGATTACCTCTGAACTGGGTCAACATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCACCTGCGTATGCTGAATCAGAAGTGGAGACAGAAGTCGAGTCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGAGAGGATATGTGCTTCCAGAGTCCTGAAATGAGTTCTGAACTGCATTTCTTGGATCCAAACATCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCAAGAAGTTTTAGCCAGATGTCCTTTTATGAGGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCCGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACTGATCGACCCTGA 837 46.71 MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNINKADTLFPSNGSLKTARSFSQMSFYEGNEQLTGKIETPENYSLYQQAEGYSMTDRP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28835532 28838951 - Tan0022861.1 Tan01g2370 739794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2370 278 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 MobiDBLite consensus disorder prediction 1 26 - -
Tan01g2370 278 MobiDBLite consensus disorder prediction 158 189 - -
Tan01g2370 278 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 MobiDBLite consensus disorder prediction 175 189 - -
Tan01g2370 278 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 275 IPR044559 GO:0003700(InterPro)
Tan01g2370 278 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Tan01g2370 278 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 Gene3D - 102 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2370 Tan-Chr1:28835532 Tan01g5120 Tan-Chr1:116549047 1.60E-69 dispersed
Tan01g2370 Tan-Chr1:28835532 Tan01g2371 Tan-Chr1:28835532 2.70E-101 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26437 PF00046 Homeodomain 8.90E-19 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2370 - - - 0.0