Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2370 ATGATGGAGTGGGAAAAGCCCGACCACCAAAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACTGGAACCACCGCCGGCGCTCTTTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAGATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTAGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAGATTACTTCTAGACAGCGATGGACTCCGACGCCCGTGCAACTCCAGATCTTGGAGCGTATATTTGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAGATTACCTCTGAACTGGGTCAACATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCACCTGCGTATGCTGAATCAGAAGTGGAGACAGAAGTCGAGTCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGAGAGGATATGTGCTTCCAGAGTCCTGAAATGAGTTCTGAACTGCATTTCTTGGATCCAAACATCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCAAGAAGTTTTAGCCAGATGTCCTTTTATGAGGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCCGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACTGATCGACCCTGA 837 46.71 MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNINKADTLFPSNGSLKTARSFSQMSFYEGNEQLTGKIETPENYSLYQQAEGYSMTDRP 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28835532 28838951 - Tan0022861.1 Tan01g2370 739794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2370 278 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 MobiDBLite consensus disorder prediction 1 26 - -
Tan01g2370 278 MobiDBLite consensus disorder prediction 158 189 - -
Tan01g2370 278 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 MobiDBLite consensus disorder prediction 175 189 - -
Tan01g2370 278 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 PANTHER WUSCHEL-RELATED HOMEOBOX 13 28 275 IPR044559 GO:0003700(InterPro)
Tan01g2370 278 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Tan01g2370 278 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
Tan01g2370 278 Gene3D - 102 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2370 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2370 Tan-Chr1:28835532 Tan01g5120 Tan-Chr1:116549047 1.60E-69 dispersed
Tan01g2370 Tan-Chr1:28835532 Tan01g2371 Tan-Chr1:28835532 2.70E-101 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan05g2195 . 3 202 Wox Gene Family AT3G18010 55.1 3.0e-49 193.4
Tan09g1827 . 1 166 Wox Gene Family AT3G18010 52.7 1.1e-38 158.3
Tan02g1790 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan02g1791 . 5 164 Wox Gene Family AT1G46480 61.9 8.9e-48 187.6
Tan08g1414 . 19 245 Wox Gene Family AT3G03660 50.4 1.3e-42 171.0
Tan01g2370 . 1 275 Wox Gene Family AT4G35550 50.3 3.3e-64 242.7
Tan01g2370 . 34 160 Wox Gene Family AT1G20700 58.5 2.0e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26437 PF00046 Homeodomain 8.90E-19 CL0123 Tan TF