Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2370 | ATGATGGAGTGGGAAAAGCCCGACCACCAAAATCCTTACCACCACCAGAACCCTCCTCTTCGCGACGATCATCTCCATCACCTCACTGGAACCACCGCCGGCGCTCTTTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAGATTGCTGTTTACGCCACCATTTGCGAGCAGCTTGTTGAGATGCACAAGACCCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTAGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAGATTACTTCTAGACAGCGATGGACTCCGACGCCCGTGCAACTCCAGATCTTGGAGCGTATATTTGAGCAAGGGAATGGAACTCCTAGCAAGCAAAAGATCAAAGAGATTACCTCTGAACTGGGTCAACATGGCCAAATTTCTGAATCAAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCACCTGCGTATGCTGAATCAGAAGTGGAGACAGAAGTCGAGTCACCAAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAAACCTCTGCACCTTTGGGAGAGGATATGTGCTTCCAGAGTCCTGAAATGAGTTCTGAACTGCATTTCTTGGATCCAAACATCAACAAAGCTGATACTTTGTTTCCTTCAAATGGAAGTTTAAAAACCGCAAGAAGTTTTAGCCAGATGTCCTTTTATGAGGGGAATGAGCAGCTGACAGGAAAGATTGAAACGCCCGAGAACTATAGTCTTTACCAGCAAGCAGAAGGCTACAGCATGACTGATCGACCCTGA | 837 | 46.71 | MMEWEKPDHQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYAESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNINKADTLFPSNGSLKTARSFSQMSFYEGNEQLTGKIETPENYSLYQQAEGYSMTDRP | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28835532 | 28838951 | - | Tan0022861.1 | Tan01g2370 | 739794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2370 | 278 | SMART | HOX_1 | 98 | 165 | IPR001356 | GO:0003677(InterPro) | |
Tan01g2370 | 278 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Tan01g2370 | 278 | MobiDBLite | consensus disorder prediction | 158 | 189 | - | - | |
Tan01g2370 | 278 | CDD | homeodomain | 100 | 162 | IPR001356 | GO:0003677(InterPro) | |
Tan01g2370 | 278 | MobiDBLite | consensus disorder prediction | 175 | 189 | - | - | |
Tan01g2370 | 278 | Pfam | Homeodomain | 100 | 160 | IPR001356 | GO:0003677(InterPro) | |
Tan01g2370 | 278 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 28 | 275 | IPR044559 | GO:0003700(InterPro) | |
Tan01g2370 | 278 | SUPERFAMILY | Homeodomain-like | 96 | 163 | IPR009057 | - | |
Tan01g2370 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 96 | 161 | IPR001356 | GO:0003677(InterPro) | |
Tan01g2370 | 278 | Gene3D | - | 102 | 167 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2370 | Tan-Chr1:28835532 | Tan01g5120 | Tan-Chr1:116549047 | 1.60E-69 | dispersed | |
Tan01g2370 | Tan-Chr1:28835532 | Tan01g2371 | Tan-Chr1:28835532 | 2.70E-101 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26437 | PF00046 | Homeodomain | 8.90E-19 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2370 | - | - | - | 0.0 |