Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2398 ATGGGGGAGGAGGAAGTGCCCATTTTGAGAATAGAACATTGGCATGAAGTTAAGACGCCAGTATCTGCTAAGAAGAGAAATGTTTCTATTCCTAATTCCCCAGATGTAAAATGCTGCAGTTCTGGCTGTGCGTTTTCCAGATTGGAACACAGTAATTTGGAGTCGTTAAACCGTTCGAAGTCGGCTATGAAGCTTAGTGGATTGATATTGTTCTATGCCATAGCTATCATAGTACAGATCATTGGTGGCTTGAGAGCCAACAGTCTTGCTGTAATGACAGATGCAGCTCACTTGCTCAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGCTGGGAGGCGACACCGCAACACTCTTTCGGGTTTAATCGTCTTGAAGTTATAGGTGCCCTTGTGTCTGTGCAGCTAATATGGCTGATTTCTGGGATCTTAATCTACGAGGCAGTCAATCGGATTCTCAGCCAAAGGACAAAGGTTAATGGATTGCTTATGTTTGCCATTGCAGCTTTTGGTTTCCTCCTTAACTTATTTATGGTCTTGTGGCTTGGCCATAGCCATTCTCATTCTCATAGCCATTCTCATTCTCATAGCCATTCTCATTCTCATAGTCATTCTCATAGTTGTCATCATAATCATCACTCTCATCAAAATCACTCGGATCATGACACTGACCATGAGAAGGAGGAGATTTACACAATGACCAAACAAGAGGGAGTTCCATTGGGGTCAAAGGACAATAGTTCAAGTTTGAACATAAATCTCCAAGGTGCTTATCTTCATGTCATCACTGATATGATTCAATCTATTGGTGTGATGATTGCTGGAGCTGTTCTATGGGTTAAACCCGACTGGGTCGTGGTCGATTTAATCTGCACTCTTGTGTTTTCTGTTCTTGCTTTAGCTACTACTTTTTCTATGCTTAGACATATAGGTGGCATATTGATGGAAGGAACACCCAAGGAGGTCAATATTGAGAGCCTAGAACATGACATCAAGAACATTAAAGGAGTCCATGCTTTACATGACTTGCATATATGGTCGATAACGGTCGGGAAAGTCGTGTTGTCGTGCCATGTTGTAGCCGAACATGGAGTTTGTGCTAGGGAGATCATTTCTAAGATTAGGAACCTCTGTGAAAAGAGATACAATATATTTCATACCACCATTCAAGTTGAGTAG 1194 42.13 MGEEEVPILRIEHWHEVKTPVSAKKRNVSIPNSPDVKCCSSGCAFSRLEHSNLESLNRSKSAMKLSGLILFYAIAIIVQIIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQHSFGFNRLEVIGALVSVQLIWLISGILIYEAVNRILSQRTKVNGLLMFAIAAFGFLLNLFMVLWLGHSHSHSHSHSHSHSHSHSHSHSHSCHHNHHSHQNHSDHDTDHEKEEIYTMTKQEGVPLGSKDNSSSLNINLQGAYLHVITDMIQSIGVMIAGAVLWVKPDWVVVDLICTLVFSVLALATTFSMLRHIGGILMEGTPKEVNIESLEHDIKNIKGVHALHDLHIWSITVGKVVLSCHVVAEHGVCAREIISKIRNLCEKRYNIFHTTIQVE 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29431514 29433380 - Tan0017301.2 Tan01g2398 739822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2398 397 NCBIfam cation diffusion facilitator family transporter 69 397 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g2398 397 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 326 397 IPR036837 -
Tan01g2398 397 MobiDBLite consensus disorder prediction 196 232 - -
Tan01g2398 397 SUPERFAMILY Cation efflux protein transmembrane domain-like 65 321 IPR027469 -
Tan01g2398 397 MobiDBLite consensus disorder prediction 196 219 - -
Tan01g2398 397 Pfam Cation efflux family 69 319 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g2398 397 Gene3D Cation efflux protein transmembrane domain 64 319 IPR027469 -
Tan01g2398 397 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 32 397 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2398 Tan-Chr1:29431514 Tan07g0139 Tan-Chr7:3787721 8.00E-75 dispersed
Tan01g2397 Tan-Chr1:29431514 Tan01g2398 Tan-Chr1:29431514 3.90E-199 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2398 K14689 - csv:101215692 582.022