Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2399 ATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCCTCCTGCGAACCGAGCTCGCGAGTCGCTAGACGCCGGAGAATGGAGATCAGGAGGTGTAAATTTGTTGCCGGTGTTGCTCCGTCCGAGACTGATACTGTTGTGAAGCGACAGAAGCTGGAGGATCGAGCGGCGTCGCTTTCCCGAGATTGCGACAACGCAGTTGAGAACCGTGTTTCCGGTGAAGAAGAGACCGTCGGGAGATTTGTCGCCGGAGAAGTTCCGACGAAGGAGGTGTCGACGAGACAGACCTCGGTTGATTCGACACCTCTGGCTCGGGAATCCCCGGGCGGAGAGATTTCGAAGTTCGGATTCTCTTCCGTTTGCGGAAGGCGGAGAGACATGGAGGATGCGGTGGCCGTTCATCCTTCGCTCTGTTTTACAGAGAAGGAAGCCACCGATAAGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGAGCGACTGCACGATCTCGTAAAAGAAGAGTTAGAAAGGGAGGAGAACGAAGAGAATCTTCCGGCGGAGTGGGACGGCGCTATGAAGAGAATCTTCCGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTAGTTGCGAATTGCAGATGCGAACTGCAGTCGCCGGACTGTGATGCCGTCGGATCCACCGCTGTTGTCGCAATTCTGACGCCGGATAAGATCATCGTCGCCAACTGTGGCGATTCAAGAGCTGTTCTTTGCCGCAACGGGAAGGCCGTCCCTCTATCCTCCGATCACAAGCCGGATCGGCCCGATGAACTAAACCGAATCGAGGAAGCCGGCGGCCGAGTGATCTACTGGGACGGACCGAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGGGATAACTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACAGATCGGACGGCGGAGGACGAGTGTTTGATTCTGGCGAGCGACGGGCTGTGGGACGTGGTGCCGAACGAGATGGCGTGTGGAGTGGCGAGCATGTGTTTACGGGGGAAGGCGGAGGAGAGGACGCCGGTGTCGCCGTGTGCGGCGGTGGGTACGGCGGCGGAGAGCGTGGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGCCACGTAG 1257 57.28 MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVVKRQKLEDRAASLSRDCDNAVENRVSGEEETVGRFVAGEVPTKEVSTRQTSVDSTPLARESPGGEISKFGFSSVCGRRRDMEDAVAVHPSLCFTEKEATDKLHFFGVYDGHGCSHVAMRCKERLHDLVKEELEREENEENLPAEWDGAMKRIFRRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAILTPDKIIVANCGDSRAVLCRNGKAVPLSSDHKPDRPDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITDRTAEDECLILASDGLWDVVPNEMACGVASMCLRGKAEERTPVSPCAAVGTAAESVDKACNDASMLLTKLALARHSTDNVSVVVVDLKRAT 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29510854 29513374 + Tan0004893.1 Tan01g2399 739823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2399 418 ProSitePatterns PPM-type phosphatase domain signature. 153 161 IPR000222 GO:0043169(InterPro)
Tan01g2399 418 Gene3D - 113 418 IPR036457 -
Tan01g2399 418 MobiDBLite consensus disorder prediction 91 112 - -
Tan01g2399 418 Pfam Protein phosphatase 2C 117 390 IPR001932 -
Tan01g2399 418 CDD PP2Cc 117 414 IPR001932 -
Tan01g2399 418 Coils Coil 167 187 - -
Tan01g2399 418 SUPERFAMILY PP2C-like 112 415 IPR036457 -
Tan01g2399 418 SMART PP2C_4 107 412 IPR001932 -
Tan01g2399 418 Coils Coil 52 72 - -
Tan01g2399 418 FunFam Protein phosphatase 2C 37 113 418 - -
Tan01g2399 418 PANTHER PROTEIN PHOSPHATASE 84 413 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan01g2399 418 ProSiteProfiles PPM-type phosphatase domain profile. 117 414 IPR001932 -
Tan01g2399 418 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g0125 Tan-Chr1:1219063 Tan01g2399 Tan-Chr1:29510854 6.00E-58 dispersed
Tan01g0126 Tan-Chr1:1219063 Tan01g2399 Tan-Chr1:29510854 1.00E-24 dispersed
Tan01g0325 Tan-Chr1:2867221 Tan01g2399 Tan-Chr1:29510854 2.50E-74 dispersed
Tan01g0326 Tan-Chr1:2867221 Tan01g2399 Tan-Chr1:29510854 1.80E-48 dispersed
Tan01g2399 Tan-Chr1:29510854 Tan11g0210 Tan-Chr11:1765307 1.10E-98 dispersed
Tan01g2399 Tan-Chr1:29510854 Tan01g2400 Tan-Chr1:29510854 5.80E-177 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2399 K14497 - csv:101206871 637.106