Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2411 ATGGGAGAGGAGGTGAAGTTGGGCGAATATGGGAGTGGTGGTGGTGGTGACGATGAGAACGGAGCTCATGACGAGCGGGTGTTTGAATGGGAGACGGGTTTGCCGGATGCGGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCACCGGAGCTTGCGTCCGCATTCAGTATCTCGACGGGGCCGTGTCGGACGGTTATGGATGTTAATCGGGCGTCGCAGAATACTTTTTCGAATCTTCGTGGATTTCAATCGCAAGCGTTTTCGTCGAATAATTTCAAGTCGTTTAACGATGATCGGACTCGGGATCATGATCCGATGGTGGTTGAAGGAGATGAGGCGACGGAGAGAGATGCGGGGTCGGATTCTAGGAAGTTGAGGAAGGTTGATTGTGCGGAGGAGGCTGATTCGGCTCTTCGGACTGATAATTCGATGGATGATCCGTCGGCGAGGACGTTGAAGAGACCGAGGCTTGTTTGGACGCCGCAATTACACAAGCGGTTCGTGGATGTTGTTGCTCATCTTGGGATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTGATGAACGTGGAGGGATTGACTCGCGAAAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGCCCGTCGTCGCCAGACCGGCTTTTTGCGTCCACGCCTGTACCGCAGAGCTTGCACGAGTCTACCAACAGTGGGCATGCGAATGGAAATGGTCATTTGCCAGTTCCGACTTCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCAGCGCCTGGTCATGCTCACAGTTATATGGGTATGCCTGTCGCTCATCCGGGAAGCGCACAGGGATACCATGGGTTTGAAACGCATCCTTACAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCACCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 52.04 MGEEVKLGEYGSGGGGDDENGAHDERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTVMDVNRASQNTFSNLRGFQSQAFSSNNFKSFNDDRTRDHDPMVVEGDEATERDAGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSLHESTNSGHANGNGHLPVPTSMPYGPPMMPMPVLGMAAPGHAHSYMGMPVAHPGSAQGYHGFETHPYNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29855141 29858647 - Tan0005398.3 Tan01g2411 739835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2411 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Tan01g2411 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Tan01g2411 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 288 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan01g2411 334 MobiDBLite consensus disorder prediction 93 123 - -
Tan01g2411 334 MobiDBLite consensus disorder prediction 96 123 - -
Tan01g2411 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Tan01g2411 334 Gene3D - 152 214 - -
Tan01g2411 334 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g2411 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Tan01g2411 334 MobiDBLite consensus disorder prediction 215 250 - -
Tan01g2411 334 MobiDBLite consensus disorder prediction 214 252 - -
Tan01g2411 334 FunFam Two-component response regulator 151 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2411 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2411 Tan-Chr1:29855141 Tan05g0421 Tan-Chr5:2964264 1.40E-72 dispersed
Tan01g2410 Tan-Chr1:29855141 Tan01g2411 Tan-Chr1:29855141 3.40E-196 tandem
Tan01g2411 Tan-Chr1:29855141 Tan01g2412 Tan-Chr1:29856153 3.40E-196 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g486 . . . Bda09g01515 . . . . Cmo13g00108 . Cma01g00619 Cma13g00110 Car01g00563 Car13g00081 Sed14g0045 . Cpe20g00834 Bhi08g00576 Tan01g2411 Cmetu12g0038 . Hepe10g1262 . Lcy11g0162 Cla02g01948 Cam02g2065 Cec02g2102 Cco02g2133 Clacu02g2052 Cmu02g1993 Cre02g2302 Cone3ag0500 Cone10ag0471 . . Lsi02g01341 Csa06g01467 Chy11g01210 Cme11g01332 Blo13g01068 . . . Bpe08g00093 . Bma07g00088 . Sed01g0847 Cmo02g00786 Cmo20g00418 Cma02g00786 . Car02g00565 Car20g00334 . . Bhi10g00739 Tan05g0421 Cmetu11g1564 . Hepe10g1262 . . Cla03g00126 Cam03g0128 Cec03g0127 Cco03g0134 Clacu03g0131 Cmu03g0752 Cre03g0444 . Csa01g02442 Chy12g00223 Cme12g00152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26440 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Tan TF