Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2412 ATGGGAGAGGAGGTGAAGTTGGGCGAATATGGGAGTGGTGGTGGTGGTGACGATGAGAACGGAGCTCATGACGAGCGGGTGTTTGAATGGGAGACGGGTTTGCCGGATGCGGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCACCGGAGCTTGCGTCCGCATTCAGTATCTCGACGGGGCCGTGTCGGACGGTTATGGATGTTAATCGGGCGTCGCAGAATACTTTTTCGAATCTTCGTGGATTTCAATCGCAAGCGTTTTCGTCGAATAATTTCAAGTCGTTTAACGATGATCGGACTCGGGATCATGATCCGATGGTGGTTGAAGGAGATGAGGCGACGGAGAGAGATGCGGGGTCGGATTCTAGGAAGTTGAGGAAGGTTGATTGTGCGGAGGAGGCTGATTCGGCTCTTCGGACTGATAATTCGATGGATGATCCGTCGGCGAGGACGTTGAAGAGACCGAGGCTTGTTTGGACGCCGCAATTACACAAGCGGTTCGTGGATGTTGTTGCTCATCTTGGGATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTGATGAACGTGGAGGGATTGACTCGCGAAAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGCCCGTCGTCGCCAGACCGGCTTTTTGCGTCCACGCCTGTACCGCAGAGCTTGCACGAGTCTACCAACAGTGGGCATGCGAATGGAAATGGTCATTTGCCAGTTCCGACTTCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCAGCGCCTGGTCATGCTCACAGTTATATGGGTATGCCTGTCGCTCATCCGGGAAGCGCACAGGGATACCATGGGTTTGAAACGCATCCTTACAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCACCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 52.04 MGEEVKLGEYGSGGGGDDENGAHDERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTVMDVNRASQNTFSNLRGFQSQAFSSNNFKSFNDDRTRDHDPMVVEGDEATERDAGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSLHESTNSGHANGNGHLPVPTSMPYGPPMMPMPVLGMAAPGHAHSYMGMPVAHPGSAQGYHGFETHPYNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29856153 29858647 - Tan0005398.2 Tan01g2412 739836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2412 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Tan01g2412 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Tan01g2412 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 288 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan01g2412 334 MobiDBLite consensus disorder prediction 93 123 - -
Tan01g2412 334 MobiDBLite consensus disorder prediction 96 123 - -
Tan01g2412 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Tan01g2412 334 Gene3D - 152 214 - -
Tan01g2412 334 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g2412 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Tan01g2412 334 MobiDBLite consensus disorder prediction 215 250 - -
Tan01g2412 334 MobiDBLite consensus disorder prediction 214 252 - -
Tan01g2412 334 FunFam Two-component response regulator 151 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2410 Tan-Chr1:29855141 Tan01g2412 Tan-Chr1:29856153 3.40E-196 dispersed
Tan01g2412 Tan-Chr1:29856153 Tan05g0421 Tan-Chr5:2964264 1.40E-72 dispersed
Tan01g2411 Tan-Chr1:29855141 Tan01g2412 Tan-Chr1:29856153 3.40E-196 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26441 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2412 - - - 0.0