Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2412 ATGGGAGAGGAGGTGAAGTTGGGCGAATATGGGAGTGGTGGTGGTGGTGACGATGAGAACGGAGCTCATGACGAGCGGGTGTTTGAATGGGAGACGGGTTTGCCGGATGCGGATGATCTCACTCCTCTGTCTCAGACGTTGATTCCACCGGAGCTTGCGTCCGCATTCAGTATCTCGACGGGGCCGTGTCGGACGGTTATGGATGTTAATCGGGCGTCGCAGAATACTTTTTCGAATCTTCGTGGATTTCAATCGCAAGCGTTTTCGTCGAATAATTTCAAGTCGTTTAACGATGATCGGACTCGGGATCATGATCCGATGGTGGTTGAAGGAGATGAGGCGACGGAGAGAGATGCGGGGTCGGATTCTAGGAAGTTGAGGAAGGTTGATTGTGCGGAGGAGGCTGATTCGGCTCTTCGGACTGATAATTCGATGGATGATCCGTCGGCGAGGACGTTGAAGAGACCGAGGCTTGTTTGGACGCCGCAATTACACAAGCGGTTCGTGGATGTTGTTGCTCATCTTGGGATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTGATGAACGTGGAGGGATTGACTCGCGAAAATGTTGCGAGTCATCTTCAGAAATATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGCCCGTCGTCGCCAGACCGGCTTTTTGCGTCCACGCCTGTACCGCAGAGCTTGCACGAGTCTACCAACAGTGGGCATGCGAATGGAAATGGTCATTTGCCAGTTCCGACTTCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCAGCGCCTGGTCATGCTCACAGTTATATGGGTATGCCTGTCGCTCATCCGGGAAGCGCACAGGGATACCATGGGTTTGAAACGCATCCTTACAATATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCACCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 52.04 MGEEVKLGEYGSGGGGDDENGAHDERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTVMDVNRASQNTFSNLRGFQSQAFSSNNFKSFNDDRTRDHDPMVVEGDEATERDAGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSLHESTNSGHANGNGHLPVPTSMPYGPPMMPMPVLGMAAPGHAHSYMGMPVAHPGSAQGYHGFETHPYNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29856153 29858647 - Tan0005398.2 Tan01g2412 739836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2412 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Tan01g2412 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Tan01g2412 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 288 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan01g2412 334 MobiDBLite consensus disorder prediction 93 123 - -
Tan01g2412 334 MobiDBLite consensus disorder prediction 96 123 - -
Tan01g2412 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Tan01g2412 334 Gene3D - 152 214 - -
Tan01g2412 334 MobiDBLite consensus disorder prediction 1 23 - -
Tan01g2412 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Tan01g2412 334 MobiDBLite consensus disorder prediction 215 250 - -
Tan01g2412 334 MobiDBLite consensus disorder prediction 214 252 - -
Tan01g2412 334 FunFam Two-component response regulator 151 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2412 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2410 Tan-Chr1:29855141 Tan01g2412 Tan-Chr1:29856153 3.40E-196 dispersed
Tan01g2412 Tan-Chr1:29856153 Tan05g0421 Tan-Chr5:2964264 1.40E-72 dispersed
Tan01g2411 Tan-Chr1:29855141 Tan01g2412 Tan-Chr1:29856153 3.40E-196 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26441 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Tan TF