Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2424 ATGGACAATCTCCTAGACGATTTTCCCAATTCATGGAATAATCTTCACTTCCTTCCCCATCTCTCAAATGGGTTGTTCAAAGTCAACCGCGAAATCGTCGATCCCCTTCAGATTCCGGCCAAGCTACAACAGCAACATCAACAGCAACTCAGTAACAATTCGTCGTCGTCGCCGTCGCTGTCGCCGTCGAGCTCCGAGGGCGACTCGCCGGACAGCCATGACACCTCGAATACGATGCTCAAGTACATCACGGAGATGCTGATGGACGAGGAAGAGGATCTCAAAACAAAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTAAGAAGTATCCCCCTTCTCCAATCGGGCTTGGCGATTCTGCTCAGAATTTGAGCTGTGATTTGGGTTTTGGTAAGGCTGAAGATGAATCTGAATCTTTTAATGGAAATTCCTCTGTTTTTGCCCCTTTTGAAAACCTTCTTTTGGGTAAAGATTCATTTCTTGGGATGCAATATATTGGCCATTTTAGGCAAGGAGCTGAGGAGGCTAGCAAATTTCTTCCTGTTAATGGAAAATTTGGAACCATTGACTTGGATAATGATTCATCTGCATCTGTTCCTTCTAGGGCTGTGGATTTTTCTTGGGCTGTTGCTGAGAGAGATGGTAGATCCAGCCTTGAAAATGAGTTGTTTAGAGAGAAGAAGAATCGTCAGAGGGAGGATAGTGATGGGGAATTGAGAAGTACTAAACAGTCTGCTACTTTTGCTGATGATAGTTCATTGTCTGAGTTGTTTGATGAAGTTTTGCTGTGTCGGGGCGAGAGTCGGCAATCCCCAACGTGCGGTTCGGATGAATCATCAGAGAGCGATGCGAATAAGAAGTCGAGAAGGAGGACGAAAGGGAAGAAGACTCGTTCTAGGAAGCAAGAGAGTAGTGTGGAAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGACTGTTTCAAATTATGATCAGAGGACTGCAAATGAGCTGCTCAATCAGATCAGGCAGCATTCTAATTCATCTGGGGATGGAAATCAGAGATTGGCTCATTACTTTGCCAAGGGCCTCGAGACTCGGCTGGCGGCTGGGACTCCTCTGTATATGCCCTTTGCAAGCAATGAAACCTCTGCTGCTGATATCTTGAAAGCTTATCAGATGTTCATCAAGGCATGTCCTTTTCGGCGGATGTCGTATTTCTATTCCAACAGAACGATTCTGAAGCTAGCTGAGAAAGTAACAAGTCTGCATATTGTTGATTTCGGTCTTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAGCGGCTCTCGTGCAGACCTGGTGGACCTCCCAAGCTTCGGATTACAGGGATTGAGCTTCCCCAGCCTGGATTCCGCCCCGCTGAACGTGTTGAGCAGACTGGTCGTCGCCTCGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACTGTTAAATATCAGGATCTAAATGTTGATAGAGATGAACTGACTATCGTGACATGTATGTTCCGAATGAAGAATGTACCCGACGAAACCGTGATTGCAAACAGCCCAAGAGACAGGGTTCTGAAGTTGATCAGGAAAATCAACCCAGATCTCTTCATTCATGCAGTCACCAATGGCTCATTCAACACTCCTTTCTTCAACACAAGGTTCAAGGAAGCACTCTTTTACTACTCATCATTGTTGGACATGTACGAGGCGACAGTTCCTCGAGGTAATCCACAGAGGCATCTATGCGAGAGGGAAATCCTGGGAAGAGATATCATGAACGTCATAGCGTGCGAGGGGCTTGAAAGAGTCGAAAGGCCGGAGACATATAAGCAGTGGCAAGTAAGGAACACAAGGGCAGGGTTCAAGCAAGTACCATTAGACCAACAATTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGACCAGGACGGAGCGTGGATGTTGCAAGGCTGGAAGGGGCGGATCATCGACGGGTTATCGTGTTGGGTAGTCGCTTAA 2088 46.31 MDNLLDDFPNSWNNLHFLPHLSNGLFKVNREIVDPLQIPAKLQQQHQQQLSNNSSSSPSLSPSSSEGDSPDSHDTSNTMLKYITEMLMDEEEDLKTKPCMLLDCLALQAAEKSFYDVLGKKYPPSPIGLGDSAQNLSCDLGFGKAEDESESFNGNSSVFAPFENLLLGKDSFLGMQYIGHFRQGAEEASKFLPVNGKFGTIDLDNDSSASVPSRAVDFSWAVAERDGRSSLENELFREKKNRQREDSDGELRSTKQSATFADDSSLSELFDEVLLCRGESRQSPTCGSDESSESDANKKSRRRTKGKKTRSRKQESSVEVVDLWTLLTQCAQTVSNYDQRTANELLNQIRQHSNSSGDGNQRLAHYFAKGLETRLAAGTPLYMPFASNETSAADILKAYQMFIKACPFRRMSYFYSNRTILKLAEKVTSLHIVDFGLLYGLQWPCLIQRLSCRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVKYQDLNVDRDELTIVTCMFRMKNVPDETVIANSPRDRVLKLIRKINPDLFIHAVTNGSFNTPFFNTRFKEALFYYSSLLDMYEATVPRGNPQRHLCEREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQQLLKSVEKIVNTEYHQDFVIDQDGAWMLQGWKGRIIDGLSCWVVA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30166427 30169079 - Tan0000567.1 Tan01g2424 739848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2424 695 ProSiteProfiles GRAS family profile. 314 693 IPR005202 -
Tan01g2424 695 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 302 686 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Tan01g2424 695 MobiDBLite consensus disorder prediction 233 259 - -
Tan01g2424 695 MobiDBLite consensus disorder prediction 233 252 - -
Tan01g2424 695 MobiDBLite consensus disorder prediction 280 313 - -
Tan01g2424 695 Pfam GRAS domain family 325 692 IPR005202 -
Tan01g2424 695 MobiDBLite consensus disorder prediction 43 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2424 Tan-Chr1:30166427 Tan01g3354 Tan-Chr1:92809387 2.60E-57 dispersed
Tan04g2033 Tan-Chr4:73062542 Tan01g2424 Tan-Chr1:30166427 1.90E-43 transposed
Tan01g2424 Tan-Chr1:30166427 Tan05g0414 Tan-Chr5:2914749 7.50E-153 wgd
Tan01g2424 Tan-Chr1:30166427 Tan08g2009 Tan-Chr8:72165090 4.70E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26442 PF03514 GRAS 1.50E-112 CL0063 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2424 K27753 - csv:101217374 1172.92