Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2462 ATGGAGGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACTGTCAAGAAGCAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATCAGGGATAGCAAAGAGCCAGTCCCTGAGGATACTCTCAAGGCTCTTGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGTAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTTACGGCTCAGTTGGAAAAAGCTTTGGAAGGAATCACCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGAGGCACCTGACTCTGAGCTGTTGGATGATATCTTTGCCCTTTACAACACAAGCAATGATTCTGCTGTAGATCAAGACCGCCTGAGGAGATTAGCTGAAAAATTACAATTAATTGGAATATCCGACCTTACACAAGAGTCCATAACTTTGCATGAGATGGTTACTGCTAGTGAAGGAGATCCAGGTGAGAGCATTGAGAAGATGTCAGGGCTGCTGAAGAAAATAAAAGATTTTGTGCAAACGGAGAACCTCGAAACGAACACTCCTGGCAGAGAAAAGAGTCCTCCAGTTAGTTGTAGTGGACAAGTATCCAATGAGAAAAATAATAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAGAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGTGAGGCTAACGGTATCGAACCACCAAAACGACCAAGCAGTGCTCGACCATGTCGAAGCTCATCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTGCTTTGCAAACTTGCATCTGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAACGCAGATAATCGCGTTGCTATTGCTGAGGCTGGTGCAATACCTCTCCTTGTTGGCCTTCTTTCAACTCCTGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTGTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTCAAGAAAGGGAGCATGGAAGCACGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGCCTCTGGAGCTATCCCGCCGCTTGTTACTCTGCTTAGCGAAGGCACTCAAAGGGGTAAGAAAGATGCCGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCGATACTCGCTAGCCATCCCGAAGGGAAAGCTGGCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCAGTTCTAGTTCATCTCTGCTCTGGAGACGAACAACACCTAGTAGAGGCCAGAGATCTTGGAGTGATCAGTTCATTGATAGATTTGGCACGCAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTCGAGCGAATGAACCGACTCTTCGAGCACGCAGTGCATACAGAGGAGATTCGGGTGCTTCGGGTGCAAGCACCAGAGTCTCAACCTCAAAACCAGCCATCACAATCAACCTCGACGACGGAAGTCGTCGGTAGCTGA 2013 47.69 MEEDNGALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTAQLEKALEGITYDKLDISDEVKEQVELVLAQFRRAKGRAEAPDSELLDDIFALYNTSNDSAVDQDRLRRLAEKLQLIGISDLTQESITLHEMVTASEGDPGESIEKMSGLLKKIKDFVQTENLETNTPGREKSPPVSCSGQVSNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAGIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVISSLIDLARNGTDRGKRKAAQLLERMNRLFEHAVHTEEIRVLRVQAPESQPQNQPSQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31419204 31424008 + Tan0018424.1 Tan01g2462 739886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2462 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 MobiDBLite consensus disorder prediction 229 253 - -
Tan01g2462 670 PANTHER U BOX DOMAIN-CONTAINING 29 631 - -
Tan01g2462 670 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Tan01g2462 670 SUPERFAMILY RING/U-box 254 334 - -
Tan01g2462 670 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g2462 670 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Tan01g2462 670 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Tan01g2462 670 MobiDBLite consensus disorder prediction 648 670 - -
Tan01g2462 670 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Tan01g2462 670 Gene3D - 343 665 IPR011989 -
Tan01g2462 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g2462 670 CDD MLKL_NTD 10 138 - -
Tan01g2462 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Tan01g2462 670 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan01g2462 670 MobiDBLite consensus disorder prediction 649 670 - -
Tan01g2462 670 CDD RING-Ubox_PUB 259 311 IPR045210 -
Tan01g2462 670 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Tan01g2462 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Tan01g2462 670 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2462 Tan-Chr1:31419204 Tan05g0378 Tan-Chr5:2751092 1.10E-169 dispersed
Tan05g2040 Tan-Chr5:70587201 Tan01g2462 Tan-Chr1:31419204 5.00E-11 dispersed
Tan05g1058 Tan-Chr5:8918421 Tan01g2462 Tan-Chr1:31419204 2.00E-83 transposed
Tan01g2462 Tan-Chr1:31419204 Tan05g0377 Tan-Chr5:2751092 1.10E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2462 K27628 - csv:101218572 1124.77