Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2463 ATGGATTTCTCTTCTGTTCCAGTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCATCAGATAACCAATAATGGATCTCCTCAGCAACAGCACCTTCTTTCACTGCCAACTCAACAACAACTGCCCTCCCCACCGCTGCAATCTCATGTTTCTGGCGCCGGGGTTGGCTCGATCCGACGTGGTTCGATGGCAGACCGAGCTCGGCTCGCCAACGTGCCGCTACCAGAGACGGCGCTCAAGTGTCCTCGATGTGATTCCACCAACACCAAGTTCTGTTACTTTAATAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGTCGATACTGGACTCGTGGTGGCGCCCTTCGGAATGTCCCGGTCGGGGGCGGTTGTCGTCGGAATAAGAAGAACAAGACTAGACGGTCGAAGTCTCCGGCGGCCGGGAATGATGTGCAGCTGAATAATAGTAACAATTCAAACTCACCCACCACTACAATTCCCTTGCACAGCAGTGCTGAGAATGTTATTGGACATTTACAGCCCCAACATCCTCACTTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACGACGAATTTAGGGGTGAATTTCAATGAGATCCAGGCTCAAGTGGGAGACATTGGAAACGGTGCCCTTCTAAATCATCATCAGTGGCGCAATTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACACCGACGGGGTTGTACCCGTTTCAAATTAGCGAAGGCAACAACAACAACACAACAAATTCAAATTCAAGGGCAACCCAGTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCATCAAATTTGGGTGTTAACAATTCGGATAACCATCAATTTTGGAGCAATGGAAATGGCTGGACAGATCTTTCAGCTATCAGTTCTTCTTCAAGTGGCCATATTTCTTGCGACTTCAATCATTAA 993 47.23 MDFSSVPVYLDPPPNWHQQSNHHHHHQITNNGSPQQQHLLSLPTQQQLPSPPLQSHVSGAGVGSIRRGSMADRARLANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAGNDVQLNNSNNSNSPTTTIPLHSSAENVIGHLQPQHPHFSFMASLNNFSRYGTTNLGVNFNEIQAQVGDIGNGALLNHHQWRNSQNFPLSGGLETPTGLYPFQISEGNNNNTTNSNSRATQLPPVKIEETQVLNLLKSSSNLGVNNSDNHQFWSNGNGWTDLSAISSSSSGHISCDFNH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31500586 31502726 + Tan0004423.1 Tan01g2463 739887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2463 330 MobiDBLite consensus disorder prediction 148 168 - -
Tan01g2463 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 73 256 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan01g2463 330 MobiDBLite consensus disorder prediction 130 168 - -
Tan01g2463 330 MobiDBLite consensus disorder prediction 25 54 - -
Tan01g2463 330 Pfam Dof domain, zinc finger 85 140 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2463 330 ProSitePatterns Zinc finger Dof-type signature. 88 124 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan01g2463 330 MobiDBLite consensus disorder prediction 11 65 - -
Tan01g2463 330 ProSiteProfiles Zinc finger Dof-type profile. 86 140 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2463 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2463 Tan-Chr1:31500586 Tan04g0300 Tan-Chr4:2442933 9.60E-50 dispersed
Tan01g1464 Tan-Chr1:14846841 Tan01g2463 Tan-Chr1:31500586 1.30E-28 transposed
Tan03g1776 Tan-Chr3:73505418 Tan01g2463 Tan-Chr1:31500586 8.20E-30 transposed
Tan01g2463 Tan-Chr1:31500586 Tan03g0966 Tan-Chr3:66106338 2.20E-38 wgd
Tan01g2463 Tan-Chr1:31500586 Tan05g0376 Tan-Chr5:2744196 8.10E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT1G29160 54.4 3.7e-40 162.2
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT1G29160 52.6 6.3e-40 161.4
Tan05g2493 . 18 166 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-40 163.7
Tan03g2576 . 11 159 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-36 150.6
Tan11g0734 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 66.0 2.2e-38 157.1
Tan09g2117 . 33 384 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.9e-88 323.9
Tan01g2463 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.4e-39 161.4
Tan03g0966 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0967 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 53.6 1.7e-37 154.5
Tan03g0966 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan03g0967 . 40 145 C2C2-Dof Transcription Factor Family AT3G55370 70.0 7.2e-38 155.6
Tan09g2004 . 24 317 C2C2-Dof Transcription Factor Family AT5G60850 52.8 2.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26443 PF02701 zf-Dof 2.20E-32 No_clan Tan TF