Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2534 ATGGCTGATGTTGGTCAGAACAACACCGCTGATTTTCCTGCTGTTCCTACCCATGGCGGTCAATATGTGCAGTACAATATCTTCGGGAATCCTTTTGAAATCACCTCCAAATATCGCCCGCCTATAATGCCAATAGGTCGCGGCGCCTACGGAATCGTCTGTTCGGTTTTGAATTCTGAGACCAACGAGATGGTTGCGATTAAGAAGATTGCCAACGCGTTTGATAATCATATGGATGCGAAGCGGACGCTCCGTGAGATTAAGCTTCTCCGCCATTTGGATCATGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCCAACGAACTCATGGATACTGATCTTCACCAAATAATCCGGTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCAAATGTCATTCATCGAGATTTGAAACCGAGCAATTTATTGCTTAATGCGAACTGTGATCTTAAAATTTGCGACTTTGGTCTTGCTCGACCAACTTCAGAAAATGAATCCATGACAGAATATGTTGTTACAAGATGGTATAGGGCACCTGAGCTACTATTGAACTCTGATTATTCAGCTGCTATAGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGCGTTTATTGACTGAGGTAAAACAATCTACAGAGAGCTTATGCACTTTATCGAATATAGATTATATAATTTTGACTATTAAAGATCTAGCTGATGTGAAAATGTCGCAGAAAATTATTGTTCCTGGATAA 873 40.21 MADVGQNNTADFPAVPTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAIKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISNELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENESMTEYVVTRWYRAPELLLNSDYSAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTEVKQSTESLCTLSNIDYIILTIKDLADVKMSQKIIVPG 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35307169 35311365 - Tan0021708.2 Tan01g2534 739958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2534 290 SUPERFAMILY Protein kinase-like (PK-like) 43 254 IPR011009 -
Tan01g2534 290 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524(InterPro)
Tan01g2534 290 SMART serkin_6 39 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2534 290 ProSiteProfiles Protein kinase domain profile. 39 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2534 290 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 258 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan01g2534 290 Pfam Protein kinase domain 44 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2534 290 Gene3D Phosphorylase Kinase; domain 1 22 122 - -
Tan01g2534 290 Gene3D Transferase(Phosphotransferase) domain 1 123 259 - -
Tan01g2534 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2534 290 FunFam Mitogen-activated protein kinase 24 133 - -
Tan01g2534 290 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2534 290 FunFam Mitogen-activated protein kinase 123 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2534 Tan-Chr1:35307169 Tan02g2236 Tan-Chr2:91350240 5.70E-123 dispersed
Tan01g2533 Tan-Chr1:35307169 Tan01g2534 Tan-Chr1:35307169 1.00E-149 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67063 PF00069 Pkinase 2.50E-66 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2534 K20536 - csv:101202796 513.072