Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2546 ATGGAGAACGATTCTTCGGCTTTGGAGATCAAAGGCCTTTCGACTTTTGATGGAAAATACTTGCTCTACAACGTTCTCGGCAACTTCTTTGAGGTCTCCGCCAAGTACGCCCCTTCAATTCAACCTGTTGGACGCGGCGCTTACGGCATTGTTTGTTGTACGACGAATTCGGAGACGAAAGATGAGGTGGCGATTAAGAAGATAGGGAATGCTTTTGATAACAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGACAATATTATAAAAATCAAAGACATAATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGATCTGCATCAGATCATTCGCTCTACTCAGGCTCTGACAGATGATCACTGTCAGTACTTCTTATACCAATTACTCCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTTAATGCAAATTGCGACCTCAAGATTTGTGACTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTAACCAGATGGTATCGAGCCCCTGAGCTACTACTTAACACTTCTGAATACACTGCAGCGATAGATATTTGGTCGGTTGGATGTATTCTCATGGAGATTCTTAGGAGGGAGCCGCTGTTTCCCGGGAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGGTACTTATCGTCTTCAAGTTTTTGCCTGCTGTTTAA 792 42.17 MENDSSALEIKGLSTFDGKYLLYNVLGNFFEVSAKYAPSIQPVGRGAYGIVCCTTNSETKDEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITEVLIVFKFLPAV 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36574048 36575977 + Tan0013559.2 Tan01g2546 739970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2546 263 Gene3D Transferase(Phosphotransferase) domain 1 121 254 - -
Tan01g2546 263 Gene3D Phosphorylase Kinase; domain 1 20 120 - -
Tan01g2546 263 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
Tan01g2546 263 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 254 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Tan01g2546 263 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2546 263 ProSiteProfiles Protein kinase domain profile. 37 263 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2546 263 FunFam Mitogen-activated protein kinase 22 131 - -
Tan01g2546 263 SUPERFAMILY Protein kinase-like (PK-like) 40 253 IPR011009 -
Tan01g2546 263 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2546 263 FunFam Mitogen-activated protein kinase 121 257 - -
Tan01g2546 263 SMART serkin_6 40 260 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2546 263 Pfam Protein kinase domain 41 244 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2546 Tan-Chr1:36574048 Tan07g1607 Tan-Chr7:67447195 4.60E-119 dispersed
Tan01g2545 Tan-Chr1:36574048 Tan01g2546 Tan-Chr1:36574048 1.10E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67065 PF00069 Pkinase 1.60E-62 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2546 K04371 - csv:101218403 485.337