Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2550 | ATGGGTTGCTTTCGTTGCACCGGTTCATCGAGCAAGAAATCGGAGGATATCGAACAAAACAACCCCAATACCTTCAATTCCAAAACCTACAAGCCTGATGATCGAACCCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTGAAGAAGGATTCTGATGTGAAGGTGGTTGCGTCTAAAGATGACCAATTGGCTTTAGATGTAAAGAAATTGAACTTGAAAGATGAGGTTTCTAAGGAAGGAGAATCCAATGGCCGTGACAAGACTTTTACATTTGAAGAACTTGCAGCGGCTACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGAAAAGTTTACAAGGGGTACTTGCAGAAAGTTAATGAGGTTGTAGCGATCAAACAACTTGACCGAAATGGACTTCAAGGAATTCGGGAGTTCGTTGTGGAAGTCTTGACTTTAAGTCTGGCTGATCACCCTAACCTGGTAAAACTCATCGGCTTTTGTGCTGATGGGGATCAGAGGCTGTTGGTTTATGAATACATGCCATTGGGATCATTGGAAAACCATTTACATGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGTTTGGAATATTTGCACGAGAAGATGAAGCCCCCGGTTATATATCGTGATCTGAAATGCTCAAACATTTTGCTCAGTGAAGGGTATCATCCAAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCCAGTGGGGATAAAACACATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCGCCGGATTATGCCATGACTGGCCAGCTGACATTCAAATCAGATATTTACAGCTTCGGTGTCGTATTATTGGAACTCATCACTGGAAGGAAAGCAATCGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCACGGCCCTTGTTCCGAGACCGTAAGAAGTTCTCGCAAATGGTTGACCCAATGCTCCAAGGACAGTATCCCGTGAGAGGATTATACCAATCTCTAGCCATCGCTGCAATGTGTGTTCAGGAGCAACCAAACATGCGGCCAGTTATATCTGATGTTGTTACCGCTTTAAACTACCTAGCGTCCCAGAAATATGATCCCCACACTCAACCAAACCAAAGCTCCCAAAAGAGACCATCTTCTCCTAAAAAGGGACGGGACGACGATAAGAGGGAAACTTCAGACAACGACGGGTCAGAGAGAGAGTGA | 1269 | 44.29 | MGCFRCTGSSSKKSEDIEQNNPNTFNSKTYKPDDRTPSDKAKVNSSLAVKKDSDVKVVASKDDQLALDVKKLNLKDEVSKEGESNGRDKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCADGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLSEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPHTQPNQSSQKRPSSPKKGRDDDKRETSDNDGSERE | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 36917313 | 36920867 | + | Tan0012193.1 | Tan01g2550 | 739974 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2550 | 422 | FunFam | probable serine/threonine-protein kinase RLCKVII | 75 | 179 | - | - | |
Tan01g2550 | 422 | Pfam | Protein kinase domain | 108 | 322 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan01g2550 | 422 | MobiDBLite | consensus disorder prediction | 400 | 422 | - | - | |
Tan01g2550 | 422 | Gene3D | Transferase(Phosphotransferase) domain 1 | 180 | 403 | - | - | |
Tan01g2550 | 422 | ProSitePatterns | Protein kinases ATP-binding region signature. | 109 | 132 | IPR017441 | GO:0005524(InterPro) | |
Tan01g2550 | 422 | SMART | serkin_6 | 103 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan01g2550 | 422 | SUPERFAMILY | Protein kinase-like (PK-like) | 89 | 395 | IPR011009 | - | |
Tan01g2550 | 422 | MobiDBLite | consensus disorder prediction | 384 | 399 | - | - | |
Tan01g2550 | 422 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 226 | 238 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan01g2550 | 422 | CDD | STKc_IRAK | 109 | 378 | - | - | |
Tan01g2550 | 422 | MobiDBLite | consensus disorder prediction | 384 | 422 | - | - | |
Tan01g2550 | 422 | FunFam | Serine/threonine-protein kinase PBS1 | 180 | 396 | - | - | |
Tan01g2550 | 422 | Gene3D | Phosphorylase Kinase; domain 1 | 88 | 179 | - | - | |
Tan01g2550 | 422 | PANTHER | OS07G0668900 PROTEIN | 53 | 404 | - | - | |
Tan01g2550 | 422 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Tan01g2550 | 422 | ProSiteProfiles | Protein kinase domain profile. | 103 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan01g2550 | 422 | MobiDBLite | consensus disorder prediction | 7 | 31 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2550 | Tan-Chr1:36917313 | Tan04g0375 | Tan-Chr4:3103382 | 1.50E-148 | dispersed | |
Tan01g2550 | Tan-Chr1:36917313 | Tan01g2551 | Tan-Chr1:36917313 | 2.60E-185 | tandem | |
Tan03g2517 | Tan-Chr3:78518946 | Tan01g2550 | Tan-Chr1:36917313 | 2.50E-40 | transposed | |
Tan01g2550 | Tan-Chr1:36917313 | Tan05g0233 | Tan-Chr5:1801858 | 1.30E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67066 | PF00069 | Pkinase | 9.50E-45 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2550 | - | - | - | 0.0 |