Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2550 ATGGGTTGCTTTCGTTGCACCGGTTCATCGAGCAAGAAATCGGAGGATATCGAACAAAACAACCCCAATACCTTCAATTCCAAAACCTACAAGCCTGATGATCGAACCCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTGAAGAAGGATTCTGATGTGAAGGTGGTTGCGTCTAAAGATGACCAATTGGCTTTAGATGTAAAGAAATTGAACTTGAAAGATGAGGTTTCTAAGGAAGGAGAATCCAATGGCCGTGACAAGACTTTTACATTTGAAGAACTTGCAGCGGCTACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGAAAAGTTTACAAGGGGTACTTGCAGAAAGTTAATGAGGTTGTAGCGATCAAACAACTTGACCGAAATGGACTTCAAGGAATTCGGGAGTTCGTTGTGGAAGTCTTGACTTTAAGTCTGGCTGATCACCCTAACCTGGTAAAACTCATCGGCTTTTGTGCTGATGGGGATCAGAGGCTGTTGGTTTATGAATACATGCCATTGGGATCATTGGAAAACCATTTACATGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGTTTGGAATATTTGCACGAGAAGATGAAGCCCCCGGTTATATATCGTGATCTGAAATGCTCAAACATTTTGCTCAGTGAAGGGTATCATCCAAAGCTATCTGATTTTGGATTGGCTAAAGTAGGTCCCAGTGGGGATAAAACACATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCGCCGGATTATGCCATGACTGGCCAGCTGACATTCAAATCAGATATTTACAGCTTCGGTGTCGTATTATTGGAACTCATCACTGGAAGGAAAGCAATCGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCACGGCCCTTGTTCCGAGACCGTAAGAAGTTCTCGCAAATGGTTGACCCAATGCTCCAAGGACAGTATCCCGTGAGAGGATTATACCAATCTCTAGCCATCGCTGCAATGTGTGTTCAGGAGCAACCAAACATGCGGCCAGTTATATCTGATGTTGTTACCGCTTTAAACTACCTAGCGTCCCAGAAATATGATCCCCACACTCAACCAAACCAAAGCTCCCAAAAGAGACCATCTTCTCCTAAAAAGGGACGGGACGACGATAAGAGGGAAACTTCAGACAACGACGGGTCAGAGAGAGAGTGA 1269 44.29 MGCFRCTGSSSKKSEDIEQNNPNTFNSKTYKPDDRTPSDKAKVNSSLAVKKDSDVKVVASKDDQLALDVKKLNLKDEVSKEGESNGRDKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCADGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLSEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPHTQPNQSSQKRPSSPKKGRDDDKRETSDNDGSERE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36917313 36920867 + Tan0012193.1 Tan01g2550 739974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2550 422 FunFam probable serine/threonine-protein kinase RLCKVII 75 179 - -
Tan01g2550 422 Pfam Protein kinase domain 108 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2550 422 MobiDBLite consensus disorder prediction 400 422 - -
Tan01g2550 422 Gene3D Transferase(Phosphotransferase) domain 1 180 403 - -
Tan01g2550 422 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Tan01g2550 422 SMART serkin_6 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2550 422 SUPERFAMILY Protein kinase-like (PK-like) 89 395 IPR011009 -
Tan01g2550 422 MobiDBLite consensus disorder prediction 384 399 - -
Tan01g2550 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan01g2550 422 CDD STKc_IRAK 109 378 - -
Tan01g2550 422 MobiDBLite consensus disorder prediction 384 422 - -
Tan01g2550 422 FunFam Serine/threonine-protein kinase PBS1 180 396 - -
Tan01g2550 422 Gene3D Phosphorylase Kinase; domain 1 88 179 - -
Tan01g2550 422 PANTHER OS07G0668900 PROTEIN 53 404 - -
Tan01g2550 422 MobiDBLite consensus disorder prediction 1 45 - -
Tan01g2550 422 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan01g2550 422 MobiDBLite consensus disorder prediction 7 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2550 Tan-Chr1:36917313 Tan04g0375 Tan-Chr4:3103382 1.50E-148 dispersed
Tan01g2550 Tan-Chr1:36917313 Tan01g2551 Tan-Chr1:36917313 2.60E-185 tandem
Tan03g2517 Tan-Chr3:78518946 Tan01g2550 Tan-Chr1:36917313 2.50E-40 transposed
Tan01g2550 Tan-Chr1:36917313 Tan05g0233 Tan-Chr5:1801858 1.30E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67066 PF00069 Pkinase 9.50E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2550 - - - 0.0