Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2579 | ATGATGTCTGAATTTGATGGGCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACAACACTCTAATTCTAACCTTAACTCACTTGTTCCTCTCAAGAAGAAGAGGAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAATAAGGGGTTTCAGAGAGACCAAAACTTGCAACTCCATCGGCGTGGACACAACTTGCCATGGAAGCTCCGACAGAGGACAAGCAAGGAGGTGATAAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTCCACCACGACCCGACGAGGGCGCTCGGCGACCTCACCGGAATCAAGAAGCACTACAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCAGTTCAGTCGGATTGGAAAGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCAGATGAAAATGCAAGAATAATCACCTCAGTTTCAACTGTAAATCATAATCAAACCTTCATAAACAACAACACTATTCAGAATAATCCCACCACAATCACCCATCACTTTTCTCCTCCTCCTCCACTACTTTTCCAACCAAACTTCGCCGCCGTCGCCGATCAGACCACCTCCACCACCAACACTTTCCCTAACTTCATCTCCGACCACGGCGGCGACCACAAGCCCCGCTCACCGCTACCGTCGTCGCCGAACCTCCCACTCTGGCTCGACCCTCCATCAAATCCCAACCCTTTTTTCTCCGCCACCGTCGCCACCCACGACTTCTCTGACCACCACCCTCCGTTCTTGCAGGAAAATCACCACTCTTTCTTATCGGAGCCGTTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCCACCCAAATGGGGCCGACCAGAACCCCCGCCACGCCGCCAATTCTATTCAACGCCACCGCCACCTCTGCCGCAGCGGCGGCGTATGGGTTGAACAACTCCGCCGCCGCCGTGTTATCGGACGGCCATCCGACGAGGAAGCCATTAATGGGCGGAGCAAAGGAAGAAATTGGAGGGCAGAATTTGACCAGAGATTTTCTCGGCGTCGGAAATCAGCTGGTCCATCTCACGCCGGTTGGCTCCAATCAATACAGTGATCAAGGCCGCCGCCATTAG | 1296 | 51.85 | MMSEFDGLSGLSTISNLIGQQHSNSNLNSLVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVIRKKVYVCPEKSCVHHDPTRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALADENARIITSVSTVNHNQTFINNNTIQNNPTTITHHFSPPPPLLFQPNFAAVADQTTSTTNTFPNFISDHGGDHKPRSPLPSSPNLPLWLDPPSNPNPFFSATVATHDFSDHHPPFLQENHHSFLSEPLTTASSYAAAPHMSATALLQKATQMGPTRTPATPPILFNATATSAAAAAYGLNNSAAAVLSDGHPTRKPLMGGAKEEIGGQNLTRDFLGVGNQLVHLTPVGSNQYSDQGRRH | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 38289580 | 38292919 | - | Tan0016222.1 | Tan01g2579 | 740003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2579 | 431 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 139 | 163 | - | - | |
Tan01g2579 | 431 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 65 | 85 | IPR013087 | - | |
Tan01g2579 | 431 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 118 | 197 | - | - | |
Tan01g2579 | 431 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 22 | 415 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Tan01g2579 | 431 | Gene3D | Classic Zinc Finger | 118 | 196 | - | - | |
Tan01g2579 | 431 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 63 | 85 | IPR013087 | - | |
Tan01g2579 | 431 | Pfam | Zinc finger, C2H2 type | 63 | 85 | IPR013087 | - | |
Tan01g2579 | 431 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 101 | 135 | - | - | |
Tan01g2579 | 431 | SMART | c2h2final6 | 63 | 85 | IPR013087 | - | |
Tan01g2579 | 431 | SMART | c2h2final6 | 105 | 135 | IPR013087 | - | |
Tan01g2579 | 431 | SMART | c2h2final6 | 140 | 160 | IPR013087 | - | |
Tan01g2579 | 431 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 166 | 204 | - | - | |
Tan01g2579 | 431 | Gene3D | Classic Zinc Finger | 42 | 116 | - | - | |
Tan01g2579 | 431 | SUPERFAMILY | beta-beta-alpha zinc fingers | 62 | 160 | IPR036236 | - | |
Tan01g2579 | 431 | FunFam | protein indeterminate-domain 12-like | 42 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2579 | Tan-Chr1:38289580 | Tan03g1047 | Tan-Chr3:66769510 | 1.90E-93 | dispersed | |
Tan01g2579 | Tan-Chr1:38289580 | Tan01g2580 | Tan-Chr1:38289580 | 1.40E-213 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26450 | PF12171 | zf-C2H2_jaz | 6.10E-05 | CL0361 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2579 | K25870 | - | csv:101212420 | 576.63 |