Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2579 ATGATGTCTGAATTTGATGGGCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACAACACTCTAATTCTAACCTTAACTCACTTGTTCCTCTCAAGAAGAAGAGGAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAATAAGGGGTTTCAGAGAGACCAAAACTTGCAACTCCATCGGCGTGGACACAACTTGCCATGGAAGCTCCGACAGAGGACAAGCAAGGAGGTGATAAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTCCACCACGACCCGACGAGGGCGCTCGGCGACCTCACCGGAATCAAGAAGCACTACAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCAGTTCAGTCGGATTGGAAAGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCAGATGAAAATGCAAGAATAATCACCTCAGTTTCAACTGTAAATCATAATCAAACCTTCATAAACAACAACACTATTCAGAATAATCCCACCACAATCACCCATCACTTTTCTCCTCCTCCTCCACTACTTTTCCAACCAAACTTCGCCGCCGTCGCCGATCAGACCACCTCCACCACCAACACTTTCCCTAACTTCATCTCCGACCACGGCGGCGACCACAAGCCCCGCTCACCGCTACCGTCGTCGCCGAACCTCCCACTCTGGCTCGACCCTCCATCAAATCCCAACCCTTTTTTCTCCGCCACCGTCGCCACCCACGACTTCTCTGACCACCACCCTCCGTTCTTGCAGGAAAATCACCACTCTTTCTTATCGGAGCCGTTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCCACCCAAATGGGGCCGACCAGAACCCCCGCCACGCCGCCAATTCTATTCAACGCCACCGCCACCTCTGCCGCAGCGGCGGCGTATGGGTTGAACAACTCCGCCGCCGCCGTGTTATCGGACGGCCATCCGACGAGGAAGCCATTAATGGGCGGAGCAAAGGAAGAAATTGGAGGGCAGAATTTGACCAGAGATTTTCTCGGCGTCGGAAATCAGCTGGTCCATCTCACGCCGGTTGGCTCCAATCAATACAGTGATCAAGGCCGCCGCCATTAG 1296 51.85 MMSEFDGLSGLSTISNLIGQQHSNSNLNSLVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVIRKKVYVCPEKSCVHHDPTRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALADENARIITSVSTVNHNQTFINNNTIQNNPTTITHHFSPPPPLLFQPNFAAVADQTTSTTNTFPNFISDHGGDHKPRSPLPSSPNLPLWLDPPSNPNPFFSATVATHDFSDHHPPFLQENHHSFLSEPLTTASSYAAAPHMSATALLQKATQMGPTRTPATPPILFNATATSAAAAAYGLNNSAAAVLSDGHPTRKPLMGGAKEEIGGQNLTRDFLGVGNQLVHLTPVGSNQYSDQGRRH 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38289580 38292919 - Tan0016222.1 Tan01g2579 740003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2579 431 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Tan01g2579 431 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tan01g2579 431 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Tan01g2579 431 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 415 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g2579 431 Gene3D Classic Zinc Finger 118 196 - -
Tan01g2579 431 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Tan01g2579 431 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Tan01g2579 431 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Tan01g2579 431 SMART c2h2final6 63 85 IPR013087 -
Tan01g2579 431 SMART c2h2final6 105 135 IPR013087 -
Tan01g2579 431 SMART c2h2final6 140 160 IPR013087 -
Tan01g2579 431 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 204 - -
Tan01g2579 431 Gene3D Classic Zinc Finger 42 116 - -
Tan01g2579 431 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Tan01g2579 431 FunFam protein indeterminate-domain 12-like 42 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2579 Tan-Chr1:38289580 Tan03g1047 Tan-Chr3:66769510 1.90E-93 dispersed
Tan01g2579 Tan-Chr1:38289580 Tan01g2580 Tan-Chr1:38289580 1.40E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26450 PF12171 zf-C2H2_jaz 6.10E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2579 K25870 - csv:101212420 576.63