Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2580 ATGTCTCCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAATAAGGGGTTTCAGAGAGACCAAAACTTGCAACTCCATCGGCGTGGACACAACTTGCCATGGAAGCTCCGACAGAGGACAAGCAAGGAGGTGATAAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGCTGCGTCCACCACGACCCGACGAGGGCGCTCGGCGACCTCACCGGAATCAAGAAGCACTACAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCAGTTCAGTCGGATTGGAAAGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCAGATGAAAATGCAAGAATAATCACCTCAGTTTCAACTGTAAATCATAATCAAACCTTCATAAACAACAACACTATTCAGAATAATCCCACCACAATCACCCATCACTTTTCTCCTCCTCCTCCACTACTTTTCCAACCAAACTTCGCCGCCGTCGCCGATCAGACCACCTCCACCACCAACACTTTCCCTAACTTCATCTCCGACCACGGCGGCGACCACAAGCCCCGCTCACCGCTACCGTCGTCGCCGAACCTCCCACTCTGGCTCGACCCTCCATCAAATCCCAACCCTTTTTTCTCCGCCACCGTCGCCACCCACGACTTCTCTGACCACCACCCTCCGTTCTTGCAGGAAAATCACCACTCTTTCTTATCGGAGCCGTTAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCCACCCAAATGGGGCCGACCAGAACCCCCGCCACGCCGCCAATTCTATTCAACGCCACCGCCACCTCTGCCGCAGCGGCGGCGTATGGGTTGAACAACTCCGCCGCCGCCGTGTTATCGGACGGCCATCCGACGAGGAAGCCATTAATGGGCGGAGCAAAGGAAGAAATTGGAGGGCAGAATTTGACCAGAGATTTTCTCGGCGTCGGAAATCAGCTGGTCCATCTCACGCCGGTTGGCTCCAATCAATACAGTGATCAAGGCCGCCGCCATTAG 1143 53.19 MSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVIRKKVYVCPEKSCVHHDPTRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALADENARIITSVSTVNHNQTFINNNTIQNNPTTITHHFSPPPPLLFQPNFAAVADQTTSTTNTFPNFISDHGGDHKPRSPLPSSPNLPLWLDPPSNPNPFFSATVATHDFSDHHPPFLQENHHSFLSEPLTTASSYAAAPHMSATALLQKATQMGPTRTPATPPILFNATATSAAAAAYGLNNSAAAVLSDGHPTRKPLMGGAKEEIGGQNLTRDFLGVGNQLVHLTPVGSNQYSDQGRRH 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38289580 38292919 - Tan0016222.2 Tan01g2580 740004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2580 380 SMART c2h2final6 12 34 IPR013087 -
Tan01g2580 380 SMART c2h2final6 89 109 IPR013087 -
Tan01g2580 380 SMART c2h2final6 54 84 IPR013087 -
Tan01g2580 380 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Tan01g2580 380 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 50 84 - -
Tan01g2580 380 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 364 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan01g2580 380 FunFam protein indeterminate-domain 5, chloroplastic-like 67 146 - -
Tan01g2580 380 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 88 112 - -
Tan01g2580 380 Pfam Zinc finger, C2H2 type 12 34 IPR013087 -
Tan01g2580 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Tan01g2580 380 Gene3D Classic Zinc Finger 8 35 - -
Tan01g2580 380 Gene3D Classic Zinc Finger 46 137 - -
Tan01g2580 380 SUPERFAMILY beta-beta-alpha zinc fingers 11 109 IPR036236 -
Tan01g2580 380 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 115 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2580 Tan-Chr1:38289580 Tan03g1047 Tan-Chr3:66769510 2.40E-84 dispersed
Tan01g2579 Tan-Chr1:38289580 Tan01g2580 Tan-Chr1:38289580 1.40E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26451 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2580 K25870 - csv:101212420 516.924