Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan01g2596 | ATGGAGTGCAGTGAGGCAAAATCCAGCCCAACTTCAACCATCCTCCATTCTCAGTCGCCGTCCTCCTCCTCCTTCCCGCCGCCGCCGCCGCCACCAAGTGTTCAGGCCGGCGTGGTGGTCAGTCCGTGTGCTGCGTGCAAGATTTTGCGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTACTTTCCTCCGTCGGATCCTCTCAAGTTCACCATTGCTCACCGAGTCTTCGGCGCCAGCAACATCATCAAACTGCTTCAGGATCTTCCTGAATCACAAAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTTTACGGGTGTGCAGGGGCCATTTGCCAGCTCCAAAAACACATAAACGAACTGCAAGCAGAGCTAGCCAAGACACAGGCTGAGCTTGTCAACATGCAGTGTCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCTCAAACCCCGCCACCGGCCCCGCTGCCGGACCACCGCTCACTTGATAACAATTTCAACATTGCCACTCCTCAGAGCTACCAAAACTACTCATCTTTGTTTGAGGATAGCAATTTTTGGGAGGCTCTTTGGACATGA | 618 | 52.75 | MECSEAKSSPTSTILHSQSPSSSSFPPPPPPPSVQAGVVVSPCAACKILRRRCTEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQLQKHINELQAELAKTQAELVNMQCHQANLVALICKELAQTPPPAPLPDHRSLDNNFNIATPQSYQNYSSLFEDSNFWEALWT | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 39333484 | 39335232 | - | Tan0019910.1 | Tan01g2596 | 740020 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan01g2596 | 205 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Tan01g2596 | 205 | Coils | Coil | 121 | 148 | - | - | |
Tan01g2596 | 205 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 40 | 170 | - | - | |
Tan01g2596 | 205 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Tan01g2596 | 205 | ProSiteProfiles | LOB domain profile. | 41 | 142 | IPR004883 | - | |
Tan01g2596 | 205 | Pfam | Lateral organ boundaries (LOB) domain | 42 | 139 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g2596 | Tan-Chr1:39333484 | Tan04g0396 | Tan-Chr4:3287048 | 6.20E-47 | dispersed | |
Tan01g2596 | Tan-Chr1:39333484 | Tan01g2599 | Tan-Chr1:39483663 | 1.60E-63 | proximal | |
Tan11g0811 | Tan-Chr11:6780495 | Tan01g2596 | Tan-Chr1:39333484 | 7.40E-43 | transposed | |
Tan01g2596 | Tan-Chr1:39333484 | Tan05g0284 | Tan-Chr5:2133005 | 3.40E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26452 | PF03195 | LOB | 4.20E-41 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan01g2596 | - | - | - | 0.0 |