Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2596 ATGGAGTGCAGTGAGGCAAAATCCAGCCCAACTTCAACCATCCTCCATTCTCAGTCGCCGTCCTCCTCCTCCTTCCCGCCGCCGCCGCCGCCACCAAGTGTTCAGGCCGGCGTGGTGGTCAGTCCGTGTGCTGCGTGCAAGATTTTGCGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTACTTTCCTCCGTCGGATCCTCTCAAGTTCACCATTGCTCACCGAGTCTTCGGCGCCAGCAACATCATCAAACTGCTTCAGGATCTTCCTGAATCACAAAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTTTACGGGTGTGCAGGGGCCATTTGCCAGCTCCAAAAACACATAAACGAACTGCAAGCAGAGCTAGCCAAGACACAGGCTGAGCTTGTCAACATGCAGTGTCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCTCAAACCCCGCCACCGGCCCCGCTGCCGGACCACCGCTCACTTGATAACAATTTCAACATTGCCACTCCTCAGAGCTACCAAAACTACTCATCTTTGTTTGAGGATAGCAATTTTTGGGAGGCTCTTTGGACATGA 618 52.75 MECSEAKSSPTSTILHSQSPSSSSFPPPPPPPSVQAGVVVSPCAACKILRRRCTEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQLQKHINELQAELAKTQAELVNMQCHQANLVALICKELAQTPPPAPLPDHRSLDNNFNIATPQSYQNYSSLFEDSNFWEALWT 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39333484 39335232 - Tan0019910.1 Tan01g2596 740020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2596 205 MobiDBLite consensus disorder prediction 1 21 - -
Tan01g2596 205 Coils Coil 121 148 - -
Tan01g2596 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 170 - -
Tan01g2596 205 MobiDBLite consensus disorder prediction 1 33 - -
Tan01g2596 205 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Tan01g2596 205 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2596 Tan-Chr1:39333484 Tan04g0396 Tan-Chr4:3287048 6.20E-47 dispersed
Tan01g2596 Tan-Chr1:39333484 Tan01g2599 Tan-Chr1:39483663 1.60E-63 proximal
Tan11g0811 Tan-Chr11:6780495 Tan01g2596 Tan-Chr1:39333484 7.40E-43 transposed
Tan01g2596 Tan-Chr1:39333484 Tan05g0284 Tan-Chr5:2133005 3.40E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26452 PF03195 LOB 4.20E-41 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2596 - - - 0.0