Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2599 ATGGAAAAAAGTGAGGCAAATATGGGCGGCGGAGTGGTCAGTCCATGTGCGGCTTGCAAGATTCTACGGCGGAGATGCAGAGAGAATTGTGTATTGGGGCCATATTTTCCACCAAATGAGCCTCTCAAATTCACCATTGCCCATAGGGTGTTTGGTGCTAGCAATATCATCAAGTTACTTCAGGATCTTCCTAAGTCGCAAAGAGCAGACGCAGTGAACAGTATGGTATACGAAGCAAGTGCAAGAATAAGAGATCCAGTTTACGGATGTGCTGGCTCAATTTTTCAACTCCAAAGACAAATAAATGACCTACAAGCAGAGTTAGCCAAGGCTCAAGCAGAGCTTCTCAACATGCAATGTCAACAAGCCAATTTGGTGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACAACCAATATATGAACAACAATCACTTAATGACATTTCCAACATTGGTAGCCCTCAAAGTTATCAGAGCTATTCACACTTGTTTGAGGATAGTAATATTTTGGAGCCTCTTTGGACTTAG 534 42.51 MEKSEANMGGGVVSPCAACKILRRRCRENCVLGPYFPPNEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPVYGCAGSIFQLQRQINDLQAELAKAQAELLNMQCQQANLVTLICKELAQMPQQPIYEQQSLNDISNIGSPQSYQSYSHLFEDSNILEPLWT 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 39483663 39485536 + Tan0005409.1 Tan01g2599 740023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2599 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 141 - -
Tan01g2599 177 Coils Coil 94 121 - -
Tan01g2599 177 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Tan01g2599 177 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2599 Tan-Chr1:39483663 Tan05g0284 Tan-Chr5:2133005 2.40E-47 dispersed
Tan01g2596 Tan-Chr1:39333484 Tan01g2599 Tan-Chr1:39483663 1.60E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26453 PF03195 LOB 2.10E-40 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2599 - - - 0.0