Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2640 ATGTCTAATAACGTAGAGGGTTCTCCAGGAAGCTCGATGCATGGAGTGACTGGGAAAGAGCAAACATTTGCGTTCTCAGTTGCATCCCCAATAGTCCCAACTGATACAACTGCTAAATTTGCATTACCAGTTGATTCAGAACACAAGGCGAAAGTGTTCAAGCTTTTCTCATTAGCAAATCCACACATGAGAACCTTTCACCTTTCATGGATTTCATTTTTCACATGCTTCGTTTCGACATTTGCAGCAGCCCCACTTGTACCCATCATCCGTGATAATCTAAACTTGACCAAAGTTGACATTGGTAACGCTGGTGTTACTTCTGTCTCTGGAAGTATATTCTCTCGTCTTGTTATGGGAGCTGTTTGTGACCTTTTAGGTCCTCGCTATGGCTGTGCTTTTCTCATTATGTTGTCTGCTCCCACTGTGTTTTGTATGTCTTTTGTTTCTTCTGCTGGTGGTTACATTGCTGTTAGATTCATGATTGGTTTCTCCCTTGCTACCTTTGTCTCCTGTCAATATTGGATGAGTACTATGTTCAACAGTCAAATCATTGGCCTTGTCAATGGTACTGCTGCTGGTTGGGGTAATATGGGTGGAGGAGCCACTCAACTCATTATGCCTTTGCTCTATGATATTATTAAGAGAGCTGGTGCTACTCCTTTCACTGCTTGGAGGATTGCTTTCTTTATCCCTGGTTCCCTTCATGTTATTATGGGCATTTTGGTTTTGACTCTTGGCCAAGACTTGCCCGATGGCAACCTTAGCAGCCTTCAGAAGAAGGGTAATGTTGCCAAAGATAAATTCTCCAATGTTCTATGGTATGCTGTGACTAATTACAGAACTTGGATCTTCGTCCTCCTGTATGGCTACTCAATGGGGGTTGAACTTTCCACGGATAATGTTATTGCTGAATATTTCTACGATAGGTTTGATCTAAAGCTGCACACGGCTGGGATTATAGCAGCAACATTCGGGATGGCTAATCTAGTGGCTCGACCCTTTGGAGGGTATGCATCGGACTACGCAGCTCGTTATTTCGGGATGAGAGGAAGACTATGGACTCTATGGATTCTCCAAACATTTGGGGGAGTGTTTTGCATGTGGCTTGGTAAAGCAAATAAGCTTCCAACAGCTATAGTAGCTATGATCTTGTTTTCAATTGGAGCTCAAGCCGCATGTGGAGCCACTTTTGGAATTATTCCCTTTATTTCTCGCCGCTCTTTGGGAATTATATCAGGTTTAACAGGAGCTGGTGGAAACTTTGGATCGGGTTTAACCCAATTAGTGTTCTTCTCAACCTCAAAATACTCGACAGATACAGGGTTGTTTTTGATGGGAATAATGATTGTTTGTTGCACTCTTCCAGTCACTTTGGTTCATTTTCCTCAATGGGGAAGCATGTTCTTACCACCAACTAAACACGTTGACAAATCAACTGAAGAATTCTACTATGGTTCTGAATGGACTGACGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATTAAGTTTGCTGAGAACAGCAGATCTGAACGTGGAAGGCGTGTTTCCTCAGCTCCAACTCCCCCCAATACCACTCCTTCTCATGTTTGA 1596 42.92 MSNNVEGSPGSSMHGVTGKEQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGSLHVIMGILVLTLGQDLPDGNLSSLQKKGNVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDYAARYFGMRGRLWTLWILQTFGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSKYSTDTGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVDKSTEEFYYGSEWTDDEKKKGLHQQSIKFAENSRSERGRRVSSAPTPPNTTPSHV 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41742968 41745339 + Tan0002796.1 Tan01g2640 740064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2640 531 Gene3D MFS general substrate transporter like domains 265 467 IPR036259 -
Tan01g2640 531 SUPERFAMILY MFS general substrate transporter 60 461 IPR036259 -
Tan01g2640 531 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 8 516 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Tan01g2640 531 FunFam Nitrate transporter 2.1 266 467 - -
Tan01g2640 531 ProSiteProfiles Major facilitator superfamily (MFS) profile. 65 459 IPR020846 GO:0022857(InterPro)
Tan01g2640 531 CDD MFS_NRT2_like 66 459 IPR044772 GO:0015112(InterPro)
Tan01g2640 531 Gene3D MFS general substrate transporter like domains 59 255 IPR036259 -
Tan01g2640 531 MobiDBLite consensus disorder prediction 492 514 - -
Tan01g2640 531 FunFam High affinity nitrate transporter 58 255 - -
Tan01g2640 531 MobiDBLite consensus disorder prediction 492 531 - -
Tan01g2640 531 MobiDBLite consensus disorder prediction 515 531 - -
Tan01g2640 531 Pfam Major Facilitator Superfamily 70 426 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2640 Tan-Chr1:41742968 Tan04g1272 Tan-Chr4:12235256 2.10E-163 dispersed
Tan01g2640 Tan-Chr1:41742968 Tan01g2641 Tan-Chr1:41765865 4.30E-302 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2640 K02575 - csv:101218244 1033.48