Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g2641 ATGTCTAATAACGTAGAGGGTTCTCCAGGAAGCTCGATGCATGGAGTGACTGGGAAAGAGCAAACATTTGCGTTCTCAGTTGCATCCCCAATAGTCCCAACTGATACAACTGCTAAATTTGCATTACCAGTTGATTCAGAACACAAGGCGAAAGTGTTCAAGCTTTTCTCATTAGCAAATCCACACATGAGAACCTTTCACCTTTCATGGATTTCATTTTTCACATGCTTCGTTTCGACATTTGCAGCAGCCCCACTTGTGCCCATCATCCGTGATAATCTAAACTTGACCAAAGTTGACATTGGTAACGCTGGTGTTACTTCTGTCTCTGGAAGTATATTCTCTCGTCTTGTTATGGGAGCTGTTTGTGACCTTTTAGGTCCTCGCTATGGCTGTGCTTTTCTCATTATGTTGTCTGCTCCCACTGTGTTTTGTATGTCTTTTGTTTCTTCTGCTGGTGGTTACATTGCTGTTAGATTCATGATTGGTTTCTCCCTTGCTACCTTTGTCTCCTGTCAATATTGGATGAGTACTATGTTCAACAGTCAAATCATTGGCCTTGTCAATGGTACTGCTGCTGGTTGGGGTAATATGGGTGGAGGAGCCACTCAACTCATTATGCCTTTGCTCTATGATATTATTAAGAGAGCTGGTGCTACTCCTTTCACTGCTTGGAGGATTGCTTTCTTTATCCCTGGTTCCCTTCATGTTATTATGGGCATTTTGGTTTTGACTCTTGGCCAAGACTTGCCCGATGGCAACCTTAGCAGCCTTCAGAAGAAGGGTAATGTTCTATGGTATGCTGTGACTAATTACAGAACTTGGATCTTCGTCCTCCTGTATGGCTACTCAATGGGGGTTGAACTTTCCACGGATAATGTTATTGCTGAATATTTCTACGATAGGTTTGATCTAAAGCTGCACACGGCTGGGATTATAGCAGCAACATTCGGGATGGCTAATCTAGTGGCTCGACCCTTTGGAGGGTATGCATCGGACTACGCAGCTCGTTATTTCGGGATGAGAGGAAGACTATGGACTCTATGGATTCTCCAAACATTTGGGGGAGTGTTTTGCATGTGGCTTGGTAAAGCAAATAAGCTTCCAACAGCTATAGTAGCTATGATCTTGTTTTCAATTGGAGCTCAAGCCGCATGTGGAGCCACTTTTGGAATTATTCCCTTTATTTCTCGCCGCTCTTTGGGAATTATATCAGGTTTAACAGGAGCTGGTGGAAACTTTGGATCGGGTTTAACCCAATTAGTGTTCTTCTCAACCTCAAAATACTCGACAGATACAGGGTTGTTTTTGATGGGAATAATGATTGTTTGTTGCACTCTTCCAGTCACTTTGGTTCATTTTCCTCAATGGGGAAGCATGTTCTTACCACCAACTAAACACGTTGACAAATCAACTGAAGAATTCTACTATGGTTCTGAATGGACTGACGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATTAAGTTTGCTGAGAACAGCAGATCTGAACGTGGAAGGCGTGTTTCCTCAGCTCCAACTCCCCCCAATACCACTCCTTCTCATGTTTGA 1572 43.13 MSNNVEGSPGSSMHGVTGKEQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGSLHVIMGILVLTLGQDLPDGNLSSLQKKGNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDYAARYFGMRGRLWTLWILQTFGGVFCMWLGKANKLPTAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSKYSTDTGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVDKSTEEFYYGSEWTDDEKKKGLHQQSIKFAENSRSERGRRVSSAPTPPNTTPSHV 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41765865 41767713 - Tan0022574.1 Tan01g2641 740065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g2641 523 ProSiteProfiles Major facilitator superfamily (MFS) profile. 65 451 IPR020846 GO:0022857(InterPro)
Tan01g2641 523 Pfam Major Facilitator Superfamily 70 418 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Tan01g2641 523 FunFam High affinity nitrate transporter 58 255 - -
Tan01g2641 523 Gene3D MFS general substrate transporter like domains 263 459 IPR036259 -
Tan01g2641 523 SUPERFAMILY MFS general substrate transporter 60 453 IPR036259 -
Tan01g2641 523 MobiDBLite consensus disorder prediction 484 506 - -
Tan01g2641 523 MobiDBLite consensus disorder prediction 484 523 - -
Tan01g2641 523 FunFam Nitrate transporter 2.1 259 459 - -
Tan01g2641 523 Gene3D MFS general substrate transporter like domains 59 254 IPR036259 -
Tan01g2641 523 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 8 508 IPR044772 GO:0005886(PANTHER)|GO:0015112(PANTHER)|GO:0015112(InterPro)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Tan01g2641 523 MobiDBLite consensus disorder prediction 507 523 - -
Tan01g2641 523 CDD MFS_NRT2_like 66 451 IPR044772 GO:0015112(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2641 Tan-Chr1:41765865 Tan04g1272 Tan-Chr4:12235256 1.30E-160 dispersed
Tan01g2640 Tan-Chr1:41742968 Tan01g2641 Tan-Chr1:41765865 4.30E-302 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g2641 K02575 - csv:101218244 1010.75